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Luca Denti
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Update README.md
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README.md

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# SGAL
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Splicing Graph ALigner
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Splicing Graph ALigner (SGAL) performs an accurate approximate mapping of RNA-seq reads against a graph representing the transcripts of a gene.
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Clone and compile with
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This version is the one submitted to AlCoB 2017 (http://grammars.grlmc.com/AlCoB2017/).
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### Prerequisites
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* python3 (maybe also python is good enough but I didn't test it)
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* python3 modules: biopython, bcbio-gff, editdistance
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### Compiling
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```bash
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git clone --recursive https://github.com/AlgoLab/galig.git
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cd galig
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./run genomic.fa annotation.gff rna_seqs.fa 3 5 gene out
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```
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This version has been tested on 64bit Linux system.
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