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fix: modify co secret names
1 parent b981c74 commit 4bd8602

2 files changed

Lines changed: 2 additions & 5 deletions

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.codeocean/secrets.json

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -5,13 +5,13 @@
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"type": "general",
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"id": "cjLL6C4tOzW2D5SQ",
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"description": "AIND Kachery API Key",
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"value": "CUSTOM_KEY"
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"value": "KACHERY_API_KEY"
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},
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{
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"type": "general",
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"id": "AOqGEmhOv3OdF6ih",
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"description": "AIND Kachery Zone",
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"value": "CUSTOM_KEY_2"
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"value": "KACHERY_ZONE"
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}
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]
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}

pipeline/nextflow.config

Lines changed: 0 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -79,9 +79,6 @@ env.PIPELINE_VERSION = "kilosort4_1.2.4"
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env.DATA_PATH = 's3://aind-ephys-data/ecephys_713593_2024-02-08_14-10-37'
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env.PARAMS_FILE = 'params_co.json'
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env.SORTER = 'kilosort4'
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env.KACHERY_API_KEY = System.getenv('CUSTOM_KEY') ?: System.getenv('KACHERY_API_KEY') ?: ''
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env.KACHERY_ZONE = System.getenv('CUSTOM_KEY_2') ?: System.getenv('KACHERY_ZONE') ?: ''
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docker {
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envWhitelist = ['KACHERY_ZONE', 'KACHERY_API_KEY']

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