add default test

Author: alejoe91

.github/workflows/test_pipeline_default.yml

@@ -0,0 +1,53 @@
+name: Test Default Nextflow Pipeline
+
+on:
+  pull_request:
+      branches: [main]
+      types: [synchronize, opened, reopened]
+  
+env: 
+  NXF_SYNTAX_PARSER: v1
+
+jobs:
+    test:
+        runs-on: ubuntu-latest
+
+        steps:
+        - name: Checkout repository
+          uses: actions/checkout@v4
+
+        - name: Set up Python
+          uses: actions/setup-python@v5
+          with:
+            python-version: "3.11"
+        
+        - name: Free up disk space
+          run: |
+            echo "Before cleanup:"
+            df -h
+            sudo rm -rf /usr/local/lib/android
+            sudo rm -rf /opt/ghc
+            sudo rm -rf /usr/share/dotnet
+            sudo rm -rf /opt/hostedtoolcache
+            echo "After cleanup:"
+            df -h
+
+        - name: Install packages
+          run: |
+            python -m pip install --upgrade pip
+            pip install spikeinterface neuroconv "pynwb<3" "hdmf<5"
+
+        - name: Generate test NWB files
+          run: |
+            python sample_dataset/create_test_nwb.py
+        
+        - name: Set up Nextflow
+          uses: nf-core/setup-nextflow@v1
+          with:
+            version: latest-stable
+
+        - name: Run Nextflow pipeline
+          run: |
+            DATA_PATH="$(pwd)/sample_dataset/nwb" RESULTS_PATH="$(pwd)/sample_dataset/nwb/results" \
+            nextflow  -C "$(pwd)/.github/workflows/nextflow_test.config" run pipeline/main_multi_backend.nf \
+            --params_file "$(pwd)/.github/workflows/params_test_default.json"