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Update FIP mapper to use passed patch_cable to fiber connection info #416

Description

@dougollerenshaw

Currently the FIP mapper makes assumptions about the patch_cord to fiber connection scheme. See the detailed issue description here: AllenNeuralDynamics/Aind.Physiology.Fip#40.

Ultimately, it'd be preferable for this information to be specified in the extracted fiber metadata. After:

are resolved, we should update the FIP mapper to:

  • Remove the hard-coded assumptions about the patch_cord to fiber mapping
  • Verify that all referenced fibers exist in the procedures for the given subject
  • Verify that the number of active patch cords is less than or equal to the number of implanted fibers
  • Verify that no duplicate mappings exist (i.e. each patch cord maps to only one fiber)

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