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Increasing memory size in stitching released capsule
1 parent 124e9a8 commit 6df2e1c

2 files changed

Lines changed: 4 additions & 4 deletions

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.codeocean/nextflow.json

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@@ -65,7 +65,7 @@
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},
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"resources": {
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"cpus": 16,
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"memory": 128
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"memory": 256
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},
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"inputs": [
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{

pipeline/main.nf

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@@ -1,5 +1,5 @@
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#!/usr/bin/env nextflow
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// hash:sha256:be6c92e6cbf99beebb2bd3e99f70b29923806851ce9494e98037c3424defc92e
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// hash:sha256:ecfa160533633226db1a111ba2725beecf07c5b14e766e6baad4ae478c07b0b5
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nextflow.enable.dsl = 1
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@@ -115,7 +115,7 @@ process capsule_aind_smartspim_stitch_128_2 {
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container "$REGISTRY_HOST/published/9fd01a17-58d1-48f5-9a7e-beeccb8c90f5:v1"
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cpus 16
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memory '120 GB'
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memory '240 GB'
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input:
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path 'capsule/data/preprocessed_data/' from capsule_aind_smartspim_destripe_shadow_correction_005_1_to_capsule_aind_smartspim_stitch_128_2_6.collect()
@@ -135,7 +135,7 @@ process capsule_aind_smartspim_stitch_128_2 {
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export CO_CAPSULE_ID=9fd01a17-58d1-48f5-9a7e-beeccb8c90f5
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export CO_CPUS=16
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export CO_MEMORY=128849018880
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export CO_MEMORY=257698037760
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mkdir -p capsule
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mkdir -p capsule/data && ln -s \$PWD/capsule/data /data

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