SE RUN

[bieyl]

state emb transform ...
_pickle.UnpicklingError: invalid load key, 'v'.

[absudabsu]

I'm hitting a similar error:

~/projects$ state emb transform --model-folder ./SE-600M/ --input ./test.h5ad --output output.h5ad                                                             
INFO:state._cli._emb._transform:Using model checkpoint: /home/.../projects/SE-600M/se600m_epoch16.ckpt
INFO:state._cli._emb._transform:Creating inference object
INFO:state._cli._emb._transform:Found protein embeddings in model folder: /home/.../projects/SE-600M/protein_embeddings.pt. Using these and overriding config.
WARNING:state._cli._emb._transform:Failed to load auto-detected protein embeddings: invalid load key, 'v'.. Will fall back to checkpoint/config.
INFO:state._cli._emb._transform:Loading model from checkpoint: /home/.../projects/SE-600M/se600m_epoch16.ckpt
WARNING:state.emb.inference:Could not extract config from checkpoint: invalid load key, 'v'.