v0.6.0

0.6.0 (2025-05-27)

Features

• add consent command (#97) (1074adf)
• add archive command (#104) (a68b976)
• add command to submit Prüfbericht (#98) (e7841aa)
• add force flag to ignore cached results (#95) (fbdff96)
• cap filename length to prevent upload errors (#96) (dd0be79)
• declare typing support for entire package (f05a4c7)
• implement grz-cli clean cmd (#90) (4397fd0)

Bug Fixes

• allow listing empty buckets (#103) (4f2e9ee)
• require nonexistent submission download directory (#102) (a42b731)
• skip strict read length check for ONT reads (#107) (1bd2055)

v0.5.0

0.5.0 (2025-04-28)

Features

• add 'list' command to list inbox submissions (dbc4f6d)
• block fully-uploaded submissions from being reuploaded (#83) (bc82a30)
• fallback to environment for S3 credentials (#88) (637d95a)
• introduce submit subcommand for sequentially running validate, encrypt and upload (#69) (6235a4c)
• introduce grz-mode for internal use (#74) (1b836d7)

Performance Improvements

• Increase minimum chunksize (#72) (10dfec9)

Documentation

• add new S3 option to example config (#71) (4eeff53)

v0.4.0

0.4.0 (2025-04-16)

Features

• add BAM file validation (enables long read submissions)
• fail fast during FASTQ validation
• S3 support for special backends
• generate a submission ID as upload target folder

v0.3.0

0.3.0 (2025-03-21)

Features

• report supported metadata schema versions with cli version (#49) (07d861e)

Bug Fixes

• use metadata model from grz-pydantic-models (#41) (5f2944e)

v0.2.0

0.2.0 (2025-03-18)

Features

• Update metadata model to v1.1.1 (#35) (eda8899)

Bug Fixes

• grz-cli --version should report correct version (#37) (a185e42)
• decryption log message should read "decryption", not "encryption" (#36) (70708dd)
• Ensure exact R1/R2 mappings in paired end sequencing submissions (#22) (cdc3f9a)
• ensure reference genomes are consistent (#26) (849c6b2)

v0.1.4

0.1.4 (2025-02-21)

Bug Fixes

• Add check for duplicate lab data names (#8) (ca6fc5d)
• Check if oncology samples have tumor cell counts. (#7) (9341d9f)
• Update metadata schema (#9) (7ca7ab0)

v0.1.3

0.1.3 (2024-12-16)

Bug Fixes

• update metadata schema
• update quality control parameters to match current BfArM guidelines

Miscellaneous Chores

• change line length to 120
• relax version requirements for dependencies
• Release-As: 0.1.3 (a4d0c45)