Overlapping features between SCOT and SCWorkflow

[bianjh-cloud]

Description of feature

(Note for future reference) single cell R-based functionalities that might work with spatial transcriptomics.

Visualization Functions

Color by Genes
Color by Metadata
Bubble Plot of Gene Expression
Dimension Reduction / Clustering
Gene Coexpression (Dual Labeling)
Violin Plots
Volcano Plots
Expression Heatmaps

Differential Gene / Pathway Functions

Limma Statistical Analysis
GSVA

[kelly-sovacool]

@bianjh-cloud are you comparing SCOT to the NIDAP-Community SCWorkflow?

[bianjh-cloud]

@bianjh-cloud are you comparing SCOT to the NIDAP-Community SCWorkflow?

Yes, I was asked by Nathan to think about functions from SCWorkflow that can potentially be used for SCOT

[kelly-sovacool]

Okay gotcha, I changed the title to make that more clear. Thanks!