[-] Unloading singularity 4.2.2 on cn0940
[+] Loading singularity 4.2.2 on cn0940
[+] Loading snakemake 7.32.4
Traceback (most recent call last):
File "/vf/users/CCBR_Pipeliner/Pipelines/XAVIER/.v3.2.2/main.py", line 5, in <module>
from src.xavier.__main__ import main
File "/vf/users/CCBR_Pipeliner/Pipelines/XAVIER/.v3.2.2/src/xavier/__main__.py", line 44, in <module>
from ccbr_tools.pipeline.util import err, exists, fatal, permissions, require
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/ccbr_tools/pipeline/util.py", line 20, in <module>
from ..pkg_util import repo_base, msg
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/ccbr_tools/pkg_util.py", line 5, in <module>
from cffconvert.cli.create_citation import create_citation
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/cffconvert/__init__.py", line 1, in <module>
from cffconvert.lib.citation import Citation
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/cffconvert/lib/citation.py", line 4, in <module>
from cffconvert.lib.cff_1_2_x.citation import Citation_1_2_x
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/cffconvert/lib/cff_1_2_x/citation.py", line 3, in <module>
import jsonschema
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/jsonschema/__init__.py", line 13, in <module>
from jsonschema._format import FormatChecker
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/jsonschema/_format.py", line 11, in <module>
from jsonschema.exceptions import FormatError
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/jsonschema/exceptions.py", line 15, in <module>
from referencing.exceptions import Unresolvable as _Unresolvable
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/referencing/__init__.py", line 5, in <module>
from referencing._core import Anchor, Registry, Resource, Specification
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/referencing/_core.py", line 9, in <module>
from rpds import HashTrieMap, HashTrieSet, List
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/rpds/__init__.py", line 1, in <module>
from .rpds import *
ModuleNotFoundError: No module named 'rpds.rpds'
[-] Unloading singularity 4.2.2 on cn0940
[+] Loading singularity 4.2.2 on cn0940
[+] Loading snakemake 7.32.4
Traceback (most recent call last):
File "/vf/users/CCBR_Pipeliner/Pipelines/XAVIER/.v3.2.2/main.py", line 5, in <module>
from src.xavier.__main__ import main
File "/vf/users/CCBR_Pipeliner/Pipelines/XAVIER/.v3.2.2/src/xavier/__main__.py", line 44, in <module>
from ccbr_tools.pipeline.util import err, exists, fatal, permissions, require
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/ccbr_tools/pipeline/util.py", line 20, in <module>
from ..pkg_util import repo_base, msg
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/ccbr_tools/pkg_util.py", line 5, in <module>
from cffconvert.cli.create_citation import create_citation
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/cffconvert/__init__.py", line 1, in <module>
from cffconvert.lib.citation import Citation
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/cffconvert/lib/citation.py", line 4, in <module>
from cffconvert.lib.cff_1_2_x.citation import Citation_1_2_x
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/cffconvert/lib/cff_1_2_x/citation.py", line 3, in <module>
import jsonschema
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/jsonschema/__init__.py", line 13, in <module>
from jsonschema._format import FormatChecker
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/jsonschema/_format.py", line 11, in <module>
from jsonschema.exceptions import FormatError
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/jsonschema/exceptions.py", line 15, in <module>
from referencing.exceptions import Unresolvable as _Unresolvable
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/referencing/__init__.py", line 5, in <module>
from referencing._core import Anchor, Registry, Resource, Specification
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/referencing/_core.py", line 9, in <module>
from rpds import HashTrieMap, HashTrieSet, List
File "/data/CCBR_Pipeliner/Tools/ccbr_tools/v0.4/rpds/__init__.py", line 1, in <module>
from .rpds import *
ModuleNotFoundError: No module named 'rpds.rpds'
