fcollections/.github/workflows/tests.yaml at 30aeadeb9702dbfc86061a242a2832de208b5d8a · CNES/fcollections · GitHub

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name: Tests

on:
  push:
    branches: ["main"]
    tags: ["*"]
  pull_request:
    branches: ["main"]

jobs:
  unit_tests:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v2
        with:
          environment-name: test-env
          init-shell: >-
            bash
          cache-environment: true
          post-cleanup: 'all'
          create-args: >-
            python=3.12
            pip
            docstring_parser
            fsspec
            h5netcdf
            jinja2
            netCDF4
            numba
            numpy
            requests
            typer
            xarray
            pytest
            pytest-cov
            sympy
            beautifulsoup4
            pyftpdlib
            shapely
            geopandas
            pyinterp>=2026.4.0
            dask
      - name: Install python dependencies
        shell: bash -el {0}
        run: |
          python -m pip install --upgrade pip
          pip install pyasynchat
          pip install -e "."
      - name: Run unit tests
        shell: bash -el {0}
        run: |
          pytest tests --cov=src/fcollections --cov-report=xml:coverage-ut.xml --cov-report=term
          mv .coverage .coverage-ut
      - name: Upload unit test coverage artifacts
        uses: actions/upload-artifact@v4
        with:
          name: unit-test-coverage
          include-hidden-files: true
          path: |
            .coverage-ut
            coverage-ut.xml

  unit_tests_no_geo:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Setup micromamba
        uses: mamba-org/setup-micromamba@v2
        with:
          environment-name: test-env
          init-shell: >-
            bash
          cache-environment: true
          post-cleanup: 'all'
          create-args: >-
            python=3.12
            pip
            docstring_parser
            fsspec
            h5netcdf
            jinja2
            netCDF4
            numba
            numpy
            requests
            typer
            xarray
            pytest
            pytest-cov
            sympy
            beautifulsoup4
            pyftpdlib
            shapely
            geopandas
            pyinterp>=2026.4.0
            dask
      - name: Install python dependencies
        shell: bash -el {0}
        run: |
          python -m pip install --upgrade pip
          pip install -e "."
      - name: Run unit tests without geo
        shell: bash -el {0}
        run: |
          pytest tests/implementations/collections --ignore tests/implementations/collections/test_area_selector.py --without-geo-packages --cov=src/fcollections --cov-report=xml:coverage-ut-nogeo.xml --cov-report=term
          mv .coverage .coverage-ut-nogeo
      - name: Upload unit test no-geo coverage artifacts
        uses: actions/upload-artifact@v4
        with:
          name: unit-test-nogeo-coverage
          include-hidden-files: true
          path: |
            .coverage-ut-nogeo
            coverage-ut-nogeo.xml

  integration_tests:
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.12
      - name: Install dependencies
        run: |
          python -m pip install --upgrade pip
          pip install -e ".[testing]"
      - name: Run integration tests
        run: |
          pytest integration_tests --cov=src/fcollections --cov-report=xml:coverage-it.xml --cov-report=term
          mv .coverage .coverage-it
      - name: Upload integration test coverage artifacts
        uses: actions/upload-artifact@v4
        with:
          name: integration-test-coverage
          include-hidden-files: true
          path: |
            .coverage-it
            coverage-it.xml

  coverage:
    runs-on: ubuntu-latest
    needs:
      - unit_tests
      - unit_tests_no_geo
      - integration_tests
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: 3.11
      - name: Install coverage
        run: pip install coverage
      - name: Download unit tests coverage artifacts
        uses: actions/download-artifact@v4
        with:
          name: unit-test-coverage
      - name: Download unit tests no geo coverage artifacts
        uses: actions/download-artifact@v4
        with:
          name: unit-test-nogeo-coverage
      - name: Download integration tests coverage artifacts
        uses: actions/download-artifact@v4
        with:
          name: integration-test-coverage
      - name: Combine coverage reports
        run: |
          coverage combine .coverage-ut .coverage-ut-nogeo .coverage-it
          coverage report --fail-under=100
          coverage xml
      - name: Upload combined coverage report
        uses: actions/upload-artifact@v4
        with:
          name: combined-coverage
          path: coverage.xml