NAMESPACE

# Generated by roxygen2: do not edit by hand

export(align_imgt_ref_to_TCR_seq)
export(align_reads)
export(aln_plot)
export(attach_imgt_alleles)
export(check_ref_seq_for_matches)
export(cigar_to_position)
export(collapse_duplicate_sequences)
export(combine_gtf_and_genome_for_cellranger)
export(compare_nonref_r)
export(compare_seq_df_long)
export(compare_seq_df_wide)
export(concat_exons)
export(concat_transcript)
export(consecutive_distinct_seq)
export(df_to_xstringset)
export(generate_random_dna)
export(genes_gtf_to_fst)
export(genome_fasta_to_fst)
export(get_bam_reads)
export(get_fasta_names)
export(get_fasta_seq_bounds)
export(get_gene_sequences)
export(get_genome_seq)
export(get_seq_from_refseq)
export(get_seqs_from_feature_df)
export(get_sequences_from_biomart)
export(get_sra_ena_aws_links_from_gse)
export(global_align)
export(imgt_tcr_segment_prep)
export(make_kv_attr_col)
export(make_short_refseq_from_gtf)
export(pick_randomNames)
export(plot_gtf)
export(plot_sc_reads)
export(prep_ref_genome)
export(process_gtf_attribute_col)
export(pwalign_multi)
export(pwalign_print)
export(pwalign_to_df)
export(pwalign_to_xstringset)
export(read_cellranger_outs)
export(read_cellranger_outs2)
export(read_fasta)
export(read_gtf)
export(read_paired_reads)
export(revcompDNA)
export(rotate_genome_and_gtf)
export(vdjdb_hits)
export(webscrape_ncbi)
export(write_fasta)
export(write_gtf)
export(write_gtf_and_genome_for_cellranger)
export(xstringset_print)
export(xstringset_to_df)
importFrom(Rcpp,sourceCpp)
importFrom(magrittr,"%>%")
importFrom(rlang,"%||%")
importFrom(zeallot,"%<-%")
useDynLib(igsc, .registration = TRUE)