[recon-surf] Fix mri_segstats arg: segfile --> seg

Author: af-a

recon_surf/recon-surf.sh

@@ -657,7 +657,7 @@ RunIt "$cmd" $LF
 # Calculate volume-based segstats for deep learning prediction (with CC, requires norm.mgz as invol)
 if [ "$vol_segstats" == "1" ]
 then
-    cmd="mri_segstats --seed 1234 --segfile $mdir/aparc.DKTatlas+aseg.deep.withCC.mgz --sum $mdir/../stats/aparc.DKTatlas+aseg.deep.volume.stats --pv $mdir/norm.mgz --empty --brainmask $mdir/brainmask.mgz --brain-vol-from-seg --excludeid 0 --subcortgray --in $mdir/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --id 2, 4, 5, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 24, 26, 28, 31, 41, 43, 44, 46, 47, 49, 50, 51, 52, 53, 54, 58, 60, 63, 77, 251, 252, 253, 254, 255, 1002, 1003, 1005, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1034, 1035, 2002, 2003, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025, 2026, 2027, 2028, 2029, 2030, 2031, 2034, 2035 --ctab /$FREESURFER_HOME/FreeSurferColorLUT.txt --subject $subject"
+    cmd="mri_segstats --seed 1234 --seg $mdir/aparc.DKTatlas+aseg.deep.withCC.mgz --sum $mdir/../stats/aparc.DKTatlas+aseg.deep.volume.stats --pv $mdir/norm.mgz --empty --brainmask $mdir/brainmask.mgz --brain-vol-from-seg --excludeid 0 --subcortgray --in $mdir/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --id 2, 4, 5, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 24, 26, 28, 31, 41, 43, 44, 46, 47, 49, 50, 51, 52, 53, 54, 58, 60, 63, 77, 251, 252, 253, 254, 255, 1002, 1003, 1005, 1006, 1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1029, 1030, 1031, 1034, 1035, 2002, 2003, 2005, 2006, 2007, 2008, 2009, 2010, 2011, 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025, 2026, 2027, 2028, 2029, 2030, 2031, 2034, 2035 --ctab /$FREESURFER_HOME/FreeSurferColorLUT.txt --subject $subject"
     RunIt "$cmd" $LF
     echo " " |& tee -a $LF
     echo "User requested segmentation only (with Corpus Callosum and vol segstats)." |& tee -a $LF