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pages/ena-submission.md

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@@ -19,7 +19,7 @@ The [European Nucleotide Archive (ENA)](https://www.ebi.ac.uk/ena/browser/) is a
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## Its components
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{% include image.html file="ENA-Reads-and-Assembly-Submission-Workflow.svg" caption="<b>Figure 1.</b> Overview of the ENA Data Submission Toolbox components, also called the 'ENA Reads and Assembly Submission Workflow'." %}
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{% include image.html file="ENA-Reads-and-Assembly-Submission-Workflow.svg" caption="<b>Figure 1.</b> Overview of the ENA Data Submission Toolbox components." %}
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### ENA metadata templates
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[<i class="fa-solid fa-play me-2"></i>Use at useGalaxy.be](https://usegalaxy.be/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fena_upload%2Fena_upload){: class="btn btn-light border rounded-pill"}
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[<i class="fa-brands fa-github me-2"></i>Source](https://github.com/galaxyproject/tools-iuc/tree/master/tools/ena_upload){: class="btn btn-light border rounded-pill"}
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[<i class="fa-solid fa-graduation-cap me-2"></i>Tutorial on GTN](https://training.galaxyproject.org/training-material/topics/galaxy-interface/tutorials/upload-data-to-ena/tutorial.html#submitting-raw-sequence-data-reads-to-the-ena){: class="btn btn-light border rounded-pill"}
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[<i class="fa-solid fa-download me-2"></i>Galaxy toolshed](https://toolshed.g2.bx.psu.edu/repository?repository_id=0db04aa13ef9d2f8){: class="btn btn-light border rounded-pill"}
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[<i class="fa-solid fa-download me-2"></i>Galaxy toolshed](https://toolshed.g2.bx.psu.edu/repository?repository_id=0db04aa13ef9d2f8){: class="btn btn-light border rounded-pill"}
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#### Galaxy ENA Webin CLI
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[<i class="fa-solid fa-play me-2"></i>Use at usegalaxy.org.au](https://usegalaxy.org.au/?tool_id=interactive_tool_ena_upload_table_builder&version=latest){: class="btn btn-light border rounded-pill"}
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#### ENA Reads and Assembly Submission Workflow
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Within the EVORA project, a "ENA Reads and Assembly Submission Workflow" was created inside Galaxy. The workflow consists of two steps as displayed in Figure 1, where first the raw reads are submitted using the [Galaxy ENA upload tool](#galaxy-ena-upload-tool) and second, consensus sequences submitted through the [Galaxy Webin CLI](#galaxy-ena-webin-cli) tool.
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[<i class="fa-solid fa-play me-2"></i>Run on usegalaxy.be](https://usegalaxy.be/u/bedro/w/ena-reads-and-assembly-submission-workflow){: class="btn btn-light border rounded-pill"}
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### Docker deployment
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When you can not use the Galaxy instances at useGalaxy.eu, .be and .au, possibly due to GDPR reasons, we also offer a ready to use Docker container. The Docker container is shipped with the previously mentioned Galaxy tools and deploys locally a fully usable Galaxy instance.

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