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Eldergenix/README.md

Eldergenix

Senior / Staff AI Engineer · Applied AI Researcher · Agent Systems

I design and ship AI systems where model reasoning, tools, memory, evaluation, permissions, and product infrastructure have to work as one reliable system.

My work spans architecture, implementation, research, and technical product leadership. I am most useful when an ambitious AI prototype needs to become an observable, testable, safety-conscious product across web, mobile, and cloud runtimes.

Portfolio · Nex Copilot · Plato Scientific · ORCID · GitHub

What I Own at Staff Scope

  • AI systems architecture: define boundaries across model routing, tool execution, memory, retrieval, evaluation, policy, data, and user experience.
  • Agent reliability and safety: build approval gates, typed tool contracts, postcondition checks, observability, failure recovery, and evaluation loops into the execution path.
  • Technical strategy: translate uncertain product and research goals into staged architectures, explicit tradeoffs, measurable acceptance criteria, and release plans.
  • Research-to-product delivery: turn papers, models, and experimental workflows into interfaces and infrastructure that people can actually use and review.
  • Cross-functional technical leadership: connect engineering, research, product, design, and operations while staying close to implementation.

Selected Systems

An AI-native agent platform spanning product workflows, developer tooling, benchmarks, observability, and web/mobile experiences.

  • Architected agent-runtime and product surfaces across TypeScript, React, Cloudflare, Postgres, and mobile clients.
  • Designed around governed tool execution, traceable runs, evaluation, and recoverable failure paths rather than prompt-only behavior.
  • Built the platform as a connected system: runtime, marketplace, benchmark, documentation, and user-facing application share explicit contracts.

Aura

A chat-first autonomous agent for iOS and web with cloud, realtime voice, and on-device AI runtimes.

  • Integrated model routing, durable memory, tool admission, human approval, browser workflows, and generative interfaces in one agent architecture.
  • Built on Expo/React Native, Cloudflare Workers, Supabase/Postgres, and native Apple capabilities.
  • Treats safety and release engineering as product features: fail-closed action gates, prompt contracts, worker-size checks, schema-drift checks, and runtime verification are part of the delivery path.

TestFlight

A multi-agent research system that turns experimental context into literature-grounded analysis and publication-style scientific artifacts.

  • Combines retrieval, specialist agents, structured analysis, reviewer loops, and evidence-aware writing.
  • Connects research workflow design with reproducible software and publication-oriented outputs.

Source

An MCP server for structured genomic and biomedical tool use across ClinVar, genes, exons, introns, literature, and precision-medicine workflows.

  • Converts heterogeneous scientific sources into typed, agent-usable queries.
  • Focuses on evidence provenance and non-diagnostic framing for high-trust biological workflows.

A proof-driven engineering loop that coordinates Claude and Codex through planning, persistent execution, review, and adversarial quality gates.

  • Uses explicit run state, isolated worktrees, verification evidence, and security/performance review before completion.
  • Explores how coding agents can increase engineering throughput without removing human ownership or quality controls.

Applied AI Research

My research interests include agent evaluation, long-horizon reliability, memory and context systems, scientific agents, genomics, retrieval, and human-in-the-loop AI.

I have three peer-reviewed publications connected to ORCID 0000-0003-2268-053X:

Additional research-oriented systems include NexVar, DeDNA, and AgentSwarm.

How I Work With AI Agents

I use agents as an engineering multiplier, not as a substitute for ownership. I define the architecture, constraints, acceptance criteria, and evidence required for a change. Agents help with exploration, implementation, testing, and independent review; production work still has to pass explicit technical and behavioral gates.

That workflow is reflected in the systems I build: typed interfaces, bounded permissions, durable run state, reproducible evaluations, reviewable diffs, and observed runtime behavior matter more than raw output volume.

Technical Focus

  • Languages: TypeScript, Python, Rust, Swift, SQL
  • AI systems: tool-using agents, MCP, model routing, RAG, structured output, memory, multi-agent orchestration, evaluation, human approval
  • Application: React, React Native, Expo, Next.js, Node.js, Bun, FastAPI
  • Data and infrastructure: Postgres, Supabase, Redis, Cloudflare Workers, Docker, CI/CD, AWS, Railway, Vercel
  • Research: PyTorch, scientific retrieval, genomics, ClinVar, variant analysis, literature-grounded workflows

Explore my work · Review my repositories

Pinned Loading

  1. Plato-Scientific-Research-Autonomous-Agent Plato-Scientific-Research-Autonomous-Agent Public

    Multi-agent AI scientist that turns experimental data into > publication-ready research papers.

    Python 93

  2. Nexis-AI/NexBench Nexis-AI/NexBench Public

    NEXBENCH measures what an autonomous agent can actually do on-chain — execute transactions, route swaps, bridge funds, manage DeFi positions, research tokens, catch drainers, reconstruct portfolios…

    TypeScript 31

  3. Proofloop Proofloop Public

    Proof-driven Claude/Codex agent loop with paired execution, persistent resume, and adversarial security/performance gates.

    TypeScript 25

  4. Durable-agent-harness Durable-agent-harness Public

    A research-grade harness for evaluating long-horizon AI agents, with ablatable memory, control-plane benchmarks, deterministic simulations, and pre-registered machine-graded results.

    Python 13

  5. autonomous-agent-runbook-guard autonomous-agent-runbook-guard Public

    AI agent automation around incident response, deployment recovery, database-change review, ticket updates, and infrastructure operations without losing review-ability or traceability.

    Python 13

  6. GenomeMCP GenomeMCP Public

    An AI-driven genomic intelligence system delivering structured ClinVar interpretation and high-precision exon, intron, and gene queries using the Model Context Protocol (MCP).

    Python 39 2