Database and Index Setup
- Allow database build from flat file list per issue #30.
Summary and Analysis
- Moved ete database json out of package data into user home directory per issue #33.
Rust version
- Capped rust requirement for build to 1.36.0.
Database and Index Setup
- Changed thread prioritization to minimize memory usage.
Binning and Analysis
- Removed special characters from taxa names so output files can be accurately viewed and parsed.
- Sped up and reduced memory required for collecting unaligned queries.
Database and Index Setup
- Fixed memory leak in C++ database building
Binning and Analysis
- New signature script fixes issue #12. Taxa with a species group roll up to expected genus and family.
Database and Index Setup
- Created precursor data file for use in python serialization.
Binning and Analysis
- Moved expected value database outside of package to user's $HOME directory so updates do not destroy previous data.
- Unaligned reads are now separated by sample.
- Binning report has more detailed statistics.
Database and Index Setup
- Stopped using deprecated data structures in C++ code
Binning and Analysis
- Added tests for mtst-signature