Coding sequence as additional output file

[fgaascht]

Hi,

I have been using Augustus in web interface for gene prediction in Fungi.
As I recently started learning programming and more specifically Python, I decided to give a try to a local version of Augustus that I installed on my Ubuntu machine.

My results are exactly what I am expecting but I was wondering if there is a way or command to also generate text or fasta files with the results like I can get directly from Augustus web interface (predicted coding sequence, predicted amino sequence).

Thank you in advance.

[MarioStanke]

The sequences are by default included as a comment to the GFF and can be extracted from the output of augustus with getAnnoFasta.pl.

[fgaascht]

Hi Mario,

Thank you for the information.