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Simulate patients from fitted model #930

Simulate patients from fitted model

Simulate patients from fitted model #930

Triggered via pull request April 21, 2026 13:13
@gravestigravesti
synchronize #449
sim_results
Status Success
Total duration 24m 13s
Artifacts 2

check.yaml

on: pull_request
Matrix: R CMD Check 🧬 / build-install-check
Coverage πŸ“”  /  Coverage πŸ“”
10m 56s
Coverage πŸ“” / Coverage πŸ“”
Audit Dependencies πŸ•΅οΈβ€β™‚οΈ  /  oysteR scan πŸ¦ͺ
1m 24s
Audit Dependencies πŸ•΅οΈβ€β™‚οΈ / oysteR scan πŸ¦ͺ
Coverage πŸ“”  /  Covtracer πŸ„
32s
Coverage πŸ“” / Covtracer πŸ„
SuperLinter πŸ¦Έβ€β™€οΈ  /  SuperLinter πŸ¦Έβ€β™‚οΈ
1m 56s
SuperLinter πŸ¦Έβ€β™€οΈ / SuperLinter πŸ¦Έβ€β™‚οΈ
SuperLinter πŸ¦Έβ€β™€οΈ  /  Lint R code 🧢
1m 47s
SuperLinter πŸ¦Έβ€β™€οΈ / Lint R code 🧢
Roxygen πŸ…Ύ  /  Manual pages check 🏁
2m 56s
Roxygen πŸ…Ύ / Manual pages check 🏁
gitleaks πŸ’§  /  gitleaks πŸ’§
5s
gitleaks πŸ’§ / gitleaks πŸ’§
gitleaks πŸ’§  /  PII Check πŸ’³
0s
gitleaks πŸ’§ / PII Check πŸ’³
Spell Check πŸ†Ž  /  Check spelling πŸ” 
1m 39s
Spell Check πŸ†Ž / Check spelling πŸ” 
Check URLs 🌐  /  Validate Links πŸ”Ž
6s
Check URLs 🌐 / Validate Links πŸ”Ž
Check URLs 🌐  /  URL Checker πŸ”Ž
0s
Check URLs 🌐 / URL Checker πŸ”Ž
Version Check 🏁  /  Version check 🏁
5s
Version Check 🏁 / Version check 🏁
Version Check 🏁  /  Emoji in NEWS.md πŸ“°
11s
Version Check 🏁 / Emoji in NEWS.md πŸ“°
License Check πŸƒ  /  Check 🚩
33s
License Check πŸƒ / Check 🚩
Grammar Check πŸ”€  /  Check πŸ“
12s
Grammar Check πŸ”€ / Check πŸ“
R CMD Check 🧬  /  Publish JUnit HTML report πŸ“°
0s
R CMD Check 🧬 / Publish JUnit HTML report πŸ“°
R CMD Check 🧬  /  Upload build tar.gz
0s
R CMD Check 🧬 / Upload build tar.gz
Coverage πŸ“”  /  Publish coverage report πŸ“°
0s
Coverage πŸ“” / Publish coverage report πŸ“°
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gitleaks πŸ’§ / gitleaks πŸ’§
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Version Check 🏁 / Version check 🏁
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Check URLs 🌐 / Validate Links πŸ”Ž
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Version Check 🏁 / Emoji in NEWS.md πŸ“°
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11, actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065, insightsengineering/pip-action@v2. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Grammar Check πŸ”€ / Check πŸ“
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830, actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11, actions/github-script@f28e40c7f34bde8b3046d885e986cb6290c5673b, actions/setup-node@49933ea5288caeca8642d1e84afbd3f7d6820020, tj-actions/changed-files@a284dc1814e3fd07f2e34267fc8f81227ed29fb8. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
License Check πŸƒ / Check 🚩
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Audit Dependencies πŸ•΅οΈβ€β™‚οΈ / oysteR scan πŸ¦ͺ
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Spell Check πŸ†Ž / Check spelling πŸ” 
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
SuperLinter πŸ¦Έβ€β™€οΈ / Lint R code 🧢
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11, Ana06/get-changed-files@e0c398b7065a8d84700c471b6afc4116d1ba4e96. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
SuperLinter πŸ¦Έβ€β™€οΈ / SuperLinter πŸ¦Έβ€β™‚οΈ
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Roxygen πŸ…Ύ / Manual pages check 🏁
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830, actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
Coverage πŸ“” / Coverage πŸ“”
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830, actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5, actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11, actions/github-script@f28e40c7f34bde8b3046d885e986cb6290c5673b, actions/setup-python@a26af69be951a213d495a4c3e4e4022e16d87065, actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02, andstor/file-existence-action@076e0072799f4942c8bc574a82233e1e4d13e9d6, emibcn/badge-action@808173dd03e2f30c980d03ee49e181626088eee8, insightsengineering/pip-action@9252b12ade07a9e628ab42b90565beaa56e8b85c, marocchino/sticky-pull-request-comment@773744901bac0e8cbb5a0dc842800d45e9b2b405, octokit/graphql-action@f7836e89a7e5bac63911bbe9653c21147b3d9bc3. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
R CMD Check 🧬 / ghcr.io/insightsengineering/rstudio, version latest
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/cache@0057852bfaa89a56745cba8c7296529d2fc39830, actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11, actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02, andstor/file-existence-action@076e0072799f4942c8bc574a82233e1e4d13e9d6, marocchino/sticky-pull-request-comment@773744901bac0e8cbb5a0dc842800d45e9b2b405. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
R CMD Check 🧬 / ghcr.io/insightsengineering/rstudio, version latest
Input 'junit_files' has been deprecated with message: Use "files" option instead.

Artifacts

Produced during runtime
Name Size Digest
check-logs-jmpost- Expired
4.66 KB
sha256:62453b18c10787f078c3979c0eb6c9f25d15b21428831df0ffdb3d24b561c84c
coverage-report Expired
466 KB
sha256:bf39f2337ec1d7f6f5aa5d150f907da6193293ca8a354479975d0520bc49341d