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fix awk call
1 parent 6912d5c commit 0105de2

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Lines changed: 2 additions & 2 deletions

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phyloFlash.pl

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1698,8 +1698,8 @@ sub emirge_run {
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# using awk for speed, these files can be huge
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run_prog("awk",
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"\'{print (NR%4 == 1) ? \"\@\" ++i : (NR%4 == 3) ? \"+\" :\$0}\'".
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" "$outfiles{"reads_mapped_cat"}{"filename"},
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"\'{print (NR%4 == 1) ? \"\@\" ++i : (NR%4 == 3) ? \"+\" :\$0}\' "
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.$outfiles{"reads_mapped_cat"}{"filename"},
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$outfiles{"reads_mapped_cat_rename"}{"filename"});
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$outfiles{"reads_mapped_cat_rename"}{"made"}++;
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