I am trying to run OmegaFold on Google collab, but with the test sequence I always get this error:
ModuleNotFoundError: No module named 'Bio.Data.SCOPData'
CalledProcessError Traceback (most recent call last)
in <cell line: 42>()
40 out.write(f">{ID}\n{sequence}\n")
41
---> 42 get_ipython().run_line_magic('shell', 'python OmegaFold/main.py --offset_rope={offset_rope} --device={device} --subbatch_size={subbatch_size} --num_cycle={num_cycle} {ID}.fasta .')
43
44 def renum_pdb_str(pdb_str, Ls=None, renum=True, offset=1):
2 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_system_commands.py in check_returncode(self)
135 def check_returncode(self):
136 if self.returncode:
--> 137 raise subprocess.CalledProcessError(
138 returncode=self.returncode, cmd=self.args, output=self.output
139 )
CalledProcessError: Command 'python OmegaFold/main.py --offset_rope=False --device=cuda --subbatch_size=500 --num_cycle=4 test_a5e17.fasta .' returned non-zero exit status 1.
I am trying to run OmegaFold on Google collab, but with the test sequence I always get this error:
ModuleNotFoundError: No module named 'Bio.Data.SCOPData'
CalledProcessError Traceback (most recent call last)
in <cell line: 42>()
40 out.write(f">{ID}\n{sequence}\n")
41
---> 42 get_ipython().run_line_magic('shell', 'python OmegaFold/main.py --offset_rope={offset_rope} --device={device} --subbatch_size={subbatch_size} --num_cycle={num_cycle} {ID}.fasta .')
43
44 def renum_pdb_str(pdb_str, Ls=None, renum=True, offset=1):
2 frames
/usr/local/lib/python3.10/dist-packages/google/colab/_system_commands.py in check_returncode(self)
135 def check_returncode(self):
136 if self.returncode:
--> 137 raise subprocess.CalledProcessError(
138 returncode=self.returncode, cmd=self.args, output=self.output
139 )
CalledProcessError: Command 'python OmegaFold/main.py --offset_rope=False --device=cuda --subbatch_size=500 --num_cycle=4 test_a5e17.fasta .' returned non-zero exit status 1.