Ran release_prepare.py script.

Author: idazucchi

changelog.md

@@ -7,6 +7,90 @@ and (starting with v4.0.0) this project adheres to [Semantic Versioning](http://
 
 ## [Unreleased](https://github.com/HumanCellAtlas/metadata-schema/tree/staging)
 
+### [module/biomaterial/medical_history.json - v9.5.0] - 2026-04-02
+### Added
+Added fasting_time, blood_test
+
+### [module/biomaterial/reproductive_history.json - v1.4.0] - 2026-04-02
+### Added
+Added menstrual_cycle_stage
+
+### [module/biomaterial/lifestyle.json - v1.1.0] - 2026-04-02
+### Added
+Added physical_activity
+
+### [module/biomaterial/human_specific.json - v2.1.0] - 2026-04-02
+### Added
+Added waist_circumference, waist_hip_ratio, lifestyle
+
+### [module/biomaterial/blood_test.json - v1.1.0] - 2026-04-02
+### Added
+Added androstenedione, androstenedione_unit, dhea, dhea_unit, estrogen, estrogen_unit, fasting_glucose, fasting_glucose_unit, fasting_insulin, fasting_insulin_unit, free_fatty_acid, free_fatty_acid_unit, haematocrit, haematocrit_unit, haemoglobin, haemoglobin_unit, hba1c, hba1c_unit, hdl, hdl_unit, homa_ir, ldl, ldl_unit, platelet_count, platelet_count_unit, shbg, shbg_unit, testosterone, testosterone_unit, triglycerides, triglycerides_unit, white_blood_cell_count, white_blood_cell_count_unit, bloodtest_time_offset
+
+### [type/protocol/biomaterial_collection/collection_protocol.json - v9.5.0] - 2026-04-02
+### Added
+Added biopsy_procedure
+
+### [type/protocol/sequencing/library_preparation_protocol.json - v6.5.0] - 2026-04-02
+### Added
+Added processing_time
+
+### [type/biomaterial/cell_suspension.json - v14.3.0] - 2026-04-02
+### Added
+Added nuclei_yield
+
+### [type/biomaterial/specimen_from_organism.json - v11.3.0] - 2026-04-02
+### Added
+Added time_to_laboratory, experimental_condition
+
+### [module/biomaterial/human_specific.json - v3.0.0] - 2026-04-02
+### Changed
+Changed body_mass_index to string
+
+### [module/biomaterial/blood_test.json - v2.0.0] - 2026-04-02
+### Added
+Added new blood_test module
+
+### [module/biomaterial/lifestyle.json - v2.0.0] - 2026-04-02
+### Added
+Added new lifestyle module
+
+### [module/ontology/file_content_ontology.json - v4.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [module/ontology/file_format_ontology.json - v3.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [type/biomaterial/donor_organism.json - v18.7.0] - 2026-04-02
+### Added
+Added fasting_time, blood_test
+
+### [core/file/file_core.json - v9.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [type/file/supplementary_file.json - v5.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [type/file/sequence_file.json - v12.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [type/file/reference_file.json - v6.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [type/file/image_file.json - v5.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
+### [type/file/analysis_file.json - v10.0.0] - 2026-04-02
+### Fixed
+Fixed class and example for EDAM ontology
+
 ## [Released](https://github.com/HumanCellAtlas/metadata-schema/)
 
 ### [type/biomaterial/specimen_from_organism.json - v11.1.1] - 2026-02-09

json_schema/update_log.csv

@@ -1,15 +1 @@
 Schema,Change type,Change message,Version,Date
-module/biomaterial/medical_history,minor,"Added fasting_time, blood_test",,
-module/biomaterial/reproductive_history,minor,"Added menstrual_cycle_stage",,
-module/biomaterial/lifestyle,minor,"Added physical_activity",,
-module/biomaterial/human_specific,minor,"Added waist_circumference, waist_hip_ratio, lifestyle",,
-module/biomaterial/blood_test,minor,"Added androstenedione, androstenedione_unit, dhea, dhea_unit, estrogen, estrogen_unit, fasting_glucose, fasting_glucose_unit, fasting_insulin, fasting_insulin_unit, free_fatty_acid, free_fatty_acid_unit, haematocrit, haematocrit_unit, haemoglobin, haemoglobin_unit, hba1c, hba1c_unit, hdl, hdl_unit, homa_ir, ldl, ldl_unit, platelet_count, platelet_count_unit, shbg, shbg_unit, testosterone, testosterone_unit, triglycerides, triglycerides_unit, white_blood_cell_count, white_blood_cell_count_unit, bloodtest_time_offset",,
-type/protocol/biomaterial_collection/collection_protocol,minor,"Added biopsy_procedure",,
-type/protocol/sequencing/library_preparation_protocol,minor,"Added processing_time",,
-type/biomaterial/cell_suspension,minor,"Added nuclei_yield",,
-type/biomaterial/specimen_from_organism,minor,"Added time_to_laboratory, experimental_condition",,
-module/biomaterial/human_specific,major,"Changed body_mass_index to string",,
-module/biomaterial/blood_test,major,"Added new blood_test module",,
-module/biomaterial/lifestyle,major,"Added new lifestyle module",,
-module/ontology/file_content_ontology,major,"Updated class and example for EDAM ontology",,
-module/ontology/file_format,major,"Updated class and example for EDAM ontology",,

json_schema/versions.json

@@ -1,12 +1,12 @@
 {
-    "last_update_date": "2026-02-09T15:53:55Z",
+    "last_update_date": "2026-04-02T19:01:56Z",
     "version_numbers": {
         "core": {
             "biomaterial": {
                 "biomaterial_core": "8.4.0"
             },
             "file": {
-                "file_core": "7.0.0"
+                "file_core": "9.0.0"
             },
             "process": {
                 "process_core": "10.0.0"
@@ -20,19 +20,20 @@
         },
         "module": {
             "biomaterial": {
-                "blood_test": "0.0.0",
+                "blood_test": "2.0.0",
                 "cell_morphology": "6.1.7",
                 "collection_institute": "1.0.0",
                 "death": "5.5.1",
                 "disease_profile": "1.1.0",
                 "familial_relationship": "6.0.3",
                 "growth_conditions": "6.4.2",
-                "human_specific": "1.6.4",
-                "medical_history": "9.1.4",
+                "human_specific": "3.0.0",
+                "lifestyle": "2.0.0",
+                "medical_history": "9.5.0",
                 "medical_tests": "1.0.0",
                 "mouse_specific": "1.0.8",
                 "preservation_storage": "6.1.1",
-                "reproductive_history": "1.0.0",
+                "reproductive_history": "1.4.0",
                 "residence": "1.0.4",
                 "state_of_specimen": "6.0.0",
                 "timecourse": "2.0.2"
@@ -47,8 +48,8 @@
                 "disease_ontology": "5.4.0",
                 "enrichment_ontology": "1.2.6",
                 "ethnicity_ontology": "5.3.9",
-                "file_content_ontology": "2.0.0",
-                "file_format_ontology": "2.0.0",
+                "file_content_ontology": "4.0.0",
+                "file_format_ontology": "3.0.0",
                 "gender_identity_ontology": "1.0.0",
                 "instrument_ontology": "5.3.6",
                 "length_unit_ontology": "5.3.5",
@@ -98,18 +99,18 @@
         "type": {
             "biomaterial": {
                 "cell_line": "16.0.0",
-                "cell_suspension": "14.1.0",
-                "donor_organism": "18.3.4",
+                "cell_suspension": "14.3.0",
+                "donor_organism": "18.7.0",
                 "imaged_specimen": "3.5.0",
                 "organoid": "11.5.0",
-                "specimen_from_organism": "11.1.1"
+                "specimen_from_organism": "11.3.0"
             },
             "file": {
-                "analysis_file": "8.0.0",
-                "image_file": "3.0.0",
-                "reference_file": "4.0.0",
-                "sequence_file": "10.0.0",
-                "supplementary_file": "3.0.0"
+                "analysis_file": "10.0.0",
+                "image_file": "5.0.0",
+                "reference_file": "6.0.0",
+                "sequence_file": "12.0.0",
+                "supplementary_file": "5.0.0"
             },
             "process": {
                 "analysis": {
@@ -126,7 +127,7 @@
                 },
                 "biomaterial_collection": {
                     "aggregate_generation_protocol": "2.1.0",
-                    "collection_protocol": "9.3.0",
+                    "collection_protocol": "9.5.0",
                     "differentiation_protocol": "2.2.0",
                     "dissociation_protocol": "6.7.0",
                     "enrichment_protocol": "3.1.0",
@@ -139,7 +140,7 @@
                 },
                 "protocol": "7.1.0",
                 "sequencing": {
-                    "library_preparation_protocol": "6.3.1",
+                    "library_preparation_protocol": "6.5.0",
                     "sequencing_protocol": "10.1.0"
                 }
             }