Merge pull request #9 from Illumina/hjo/4.5.4

update DRAGEN 4.5.4

Author: hjo-ilmn

app/packages/dragen/dragen.zip

@@ -306,8 +306,9 @@ def set_resource_limits(self):
                             rlimit[res] = int(fields[3])
         else:
             rlimit[resource.RLIMIT_NPROC] = 16384
-            rlimit[resource.RLIMIT_NOFILE] = 65535
+            rlimit[resource.RLIMIT_NOFILE] = 720000
             rlimit[resource.RLIMIT_STACK] = 10240 * 1024
+            rlimit[resource.RLIMIT_MEMLOCK] = 4194384
 
         for res, limit in six.iteritems(rlimit):
             printf("Setting resource %s to %s" % (res, limit))

app/source/dragen/src/dragen_qs.py

@@ -360,6 +360,7 @@ Resources:
         Vcpus: !If [Is6xl, 24, 48]
         Memory: !If [Is6xl, 240000, 480000]
         JobRoleArn: !GetAtt DragenJobRole.Arn
+        Privileged: True
         MountPoints:
           - ContainerPath: "/scratch"
             ReadOnly: False
@@ -373,7 +374,7 @@ Resources:
           - ContainerPath: "/var/lib/edico"
             ReadOnly: False
             SourceVolume: docker_var_lib_edico
-          - ContainerPath: "/usr/lib64/libdragen.so.4.4.4"
+          - ContainerPath: "/usr/lib64/libdragen.so.4.5.4"
             ReadOnly: False
             SourceVolume: docker_usr_lib64
         Volumes:
@@ -391,7 +392,7 @@ Resources:
               SourcePath: "/var/lib/edico"
           - Name: docker_usr_lib64
             Host:
-              SourcePath: "/usr/lib64/libdragen.so.4.4.4"
+              SourcePath: "/usr/lib64/libdragen.so.4.5.4"
 
 Outputs:
   DragenComputeEnvironmentSpot:

templates/batch.template.yaml

@@ -78,13 +78,21 @@ Mappings:
     AMI:
       DRAGEN: dragen-completesuite-*
     us-east-1:
-      DRAGEN: ami-0b200106f98d8acd2
+      DRAGEN: ami-029e470c5fbada5c1
     us-west-2:
-      DRAGEN: ami-07a7d63c4157030dc
+      DRAGEN: ami-0641521f1dfe332cf
+    ca-central-1:
+      DRAGEN: ami-0f678e5c6b2508556
+    eu-central-1:
+      DRAGEN: ami-05626d590dad557ec
     eu-west-2:
-      DRAGEN: ami-0ece6aa6f1f8d79f2
+      DRAGEN: ami-0c21d532139a70ad9
     ap-southeast-2:
-      DRAGEN: ami-0ffc6f405569e4661
+      DRAGEN: ami-0e1d0e73883b201cb
+    ap-northeast-1:
+      DRAGEN: ami-0b4a0cfd87398922c
+    ap-northeast-2:
+      DRAGEN: ami-04905ca8889c9a7b7
 
 Parameters:
   InstanceType:
@@ -190,8 +198,12 @@ Rules:
         Fn::Contains:
         - - us-east-1
           - us-west-2
+          - ca-central-1
+          - eu-central-1
           - eu-west-2
           - ap-southeast-2
+          - ap-northeast-1
+          - ap-northeast-2   
         - !Ref AWS::Region
       AssertDescription: This Quick Start utilizes DRAGEN Marketplace AMI which is only available
         in specified AWS Regions. Please launch the stack in one of these