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- Added a link to the K-Dense blog for more resources and updates.
- Revised the "Stay up to date" section to include the blog and related posts.
- Included additional blog links in the skills section for better context on AI capabilities and tools.
- Created a new "From the K-Dense Blog" section summarizing relevant blog posts related to the tool and skills.
> 🚀 **Looking for more advanced capabilities?** For end-to-end scientific writing, deep scientific search, advanced image generation and enterprise solutions, visit **[www.k-dense.ai](https://www.k-dense.ai)**
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> **Stay up to date:**Follow K-Dense on [X](https://x.com/k_dense_ai), [LinkedIn](https://www.linkedin.com/company/k-dense-inc), and [YouTube](https://www.youtube.com/@K-Dense-Inc) for new features, release announcements, walkthroughs, research workflow demos, and examples you can use with Scientific Writer.
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> **Stay up to date:**Read the [K-Dense blog](https://www.k-dense.ai/blog), and follow us on [X](https://x.com/k_dense_ai), [LinkedIn](https://www.linkedin.com/company/k-dense-inc), and [YouTube](https://www.youtube.com/@K-Dense-Inc) for new features, release announcements, walkthroughs, research workflow demos, and examples you can use with Scientific Writer. See [From the K-Dense Blog](#from-the-k-dense-blog) for posts that map to this tool.
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**A deep research and writing tool** that combines the power of AI-driven deep research with well-formatted written outputs. Generate publication-ready scientific papers, reports, posters, grant proposals, literature reviews, and more academic documents—all backed by real-time literature search and verified citations.
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Scientific Writer performs comprehensive research before writing, ensuring every claim is supported by real, verifiable sources. Features include real-time research lookup through Parallel Search and Extract, intelligent paper detection, comprehensive document conversion, and AI-powered diagram generation. You can use it as a Claude Code plugin, Python package, or native CLI.
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Scientific Writer performs comprehensive research before writing, ensuring every claim is supported by real, verifiable sources. Features include real-time research lookup through Parallel Search and Extract, intelligent paper detection, comprehensive document conversion, and AI-powered diagram generation. You can use it as a Claude Code plugin, Python package, or native CLI. The announcement post, [Claude Scientific Writer: Our Open Source Tool for AI-Powered Research Writing](https://www.k-dense.ai/blog/claude-scientific-writer-open-source), covers why we built it and what it produces.
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## Quick Start
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### Available Skills
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When installed as a plugin, you get instant access to a reproducible subset of [K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills), pinned in`skills.lock.json`:
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- `scientific-schematics` - AI diagram generation with Nano Banana 2 (CONSORT, neural networks, pathways)
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When installed as a plugin, you get instant access to a reproducible subset of [K-Dense-AI/scientific-agent-skills](https://github.com/K-Dense-AI/scientific-agent-skills), pinned in`skills.lock.json`. Background on the skills model is in [Agent Skills: The Final Piece forAI-Powered Scientific Research](https://www.k-dense.ai/blog/agent-skills-final-piece-for-ai-powered-research) and [K-Dense Web vs Scientific Agent Skills](https://www.k-dense.ai/blog/k-dense-web-vs-scientific-agent-skills). Read [Securityin the Science Agent Era](https://www.k-dense.ai/blog/skill-security-before-you-install) before installing skills in a lab environment.
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- `scientific-schematics` - AI diagram generation with Nano Banana 2 (CONSORT, neural networks, pathways); see [Benchmarking Nano Banana 2 Lite for Scientific Image Generation](https://www.k-dense.ai/blog/benchmarking-nano-banana-2-lite-scientific-image-model)
- **Real-time research lookup** powered by Parallel Search and Extract
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- **Real-time research lookup** powered by Parallel Search and Extract; why verification matters is covered in [The AI Co-Scientist Is Here. The Bottleneck Is Verification.](https://www.k-dense.ai/blog/ai-co-scientist-verification-bottleneck)
- **Intelligent paper detection** - automatically identifies references to existing papers
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- **Peer review feedback** with quantitative ScholarEval framework (8-dimension scoring)
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- [🔧 API Reference](docs/API.md) - Full programmatic API documentation
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- [🎯 Skills Overview](docs/SKILLS.md) - All available skills and tools
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- [🐛 Troubleshooting](docs/TROUBLESHOOTING.md) - Common issues and solutions
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- [📰 From the K-Dense Blog](#from-the-k-dense-blog) - Related posts on writing, skills, citations, grants, and the hosted sibling product
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### Developer Resources
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- [🤝 Contributing Guide](CONTRIBUTING.md) - Dev setup, tests, and PR guidelines
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- [🤖 System Instructions](CLAUDE.md) - Agent instructions (advanced), mirrored to [AGENTS.md](AGENTS.md)
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- [📝 Zotero DOCX Extension](extensions/docx-editor-zotero/README.md) - Optional citation-preserving Word workflow
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## From the K-Dense Blog
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Tutorials, comparisons, and research notes from the [K-Dense blog](https://www.k-dense.ai/blog) that relate to this repository. The hosted product that includes a deeper version of this writing engine is [K-Dense Web](https://www.k-dense.ai).
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### This tool
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| Post | Why it is relevant |
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|------|-------------------|
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| [Claude Scientific Writer: Our Open Source Tool for AI-Powered Research Writing](https://www.k-dense.ai/blog/claude-scientific-writer-open-source) | Announcement: research-first writing, venue-specific outputs, data/figure integration, and MIT license |
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| [K-Dense Web vs Scientific Agent Skills: Why We Built Both](https://www.k-dense.ai/blog/k-dense-web-vs-scientific-agent-skills) | When to use this open-source plugin versus the hosted platform |
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| [K-Dense Web vs Claude Code: Different Tools for Different Jobs](https://www.k-dense.ai/blog/k-dense-web-vs-claude-code) | How the Claude Code plugin fits next to the hosted multi-agent product |
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| [Your AI Assistant Reasons Like a Generalist. Science Needs a Specialist.](https://www.k-dense.ai/blog/introducing-scientific-agents) | Places Scientific Writer in the broader open-source science-agent stack |
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### Skills, figures, and other agents
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| Post | Why it is relevant |
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|------|-------------------|
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| [Agent Skills: The Final Piece for AI-Powered Scientific Research](https://www.k-dense.ai/blog/agent-skills-final-piece-for-ai-powered-research) | The skills model behind the plugin (`scientific-schematics`, `research-lookup`, grants, posters, and the rest) |
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| [Security in the Science Agent Era: What Every Lab Needs to Know Before Installing Skills](https://www.k-dense.ai/blog/skill-security-before-you-install) | Prompt-injection, poisoned `SKILL.md` files, auditing, and version pinning |
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| [Benchmarking Nano Banana 2 Lite for Scientific Image Generation](https://www.k-dense.ai/blog/benchmarking-nano-banana-2-lite-scientific-image-model) | Figure-generation quality for schematics, slides, and infographics |
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| [How to Use Multica forScientific Research](https://www.k-dense.ai/blog/multica-scientific-research) | Loading scientific-writing, literature-review, and related skillsin another Agent Skills host |
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| [The Sandboxed AI Scientist: Pairing NVIDIA OpenShell with Scientific Agent Skills](https://www.k-dense.ai/blog/sandboxed-ai-scientist-openshell-skills) | Running skills in a policy-governed sandbox |
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### Research, citations, and writing quality
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| Post | Why it is relevant |
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|------|-------------------|
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| [The AI Co-Scientist Is Here. The Bottleneck Is Verification.](https://www.k-dense.ai/blog/ai-co-scientist-verification-bottleneck) | Why this tool researches and verifies before it writes |
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| [Reproduction, Not Generation, Is AI's Killer App for Science](https://www.k-dense.ai/blog/reproduction-not-generation-ai-for-science) | Auditable, checkable outputs rather than unchecked generation |
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| [K-Dense Web vs ChatGPT: Why Traditional AI Assistants Fall Short for Research](https://www.k-dense.ai/blog/k-dense-web-vs-chatgpt) | Research-backed writing versus conversational drafting |
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| [K-Dense Web vs OpenAI Prism: Task Execution vs Writing Assistance](https://www.k-dense.ai/blog/k-dense-web-vs-openai-prism) | Execution-plus-writing versus a writing-only assistant |
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| [Guide to Prompting K-Dense Web: Get Better Results in Minutes](https://www.k-dense.ai/blog/guide-to-prompting-k-dense-web) | Prompt patterns that transfer to the CLI, API, and plugin |
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### Grants, proposals, and long-form reports
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| Post | Why it is relevant |
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|------|-------------------|
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| [From Blank Page to Research Roadmap: How AI Helps Define New Scientific Directions](https://www.k-dense.ai/blog/ai-research-direction-discovery-phd-proposal) | Literature synthesis and a 26-page PhD-style proposal |
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| [Catalyzing Breakthroughs: A 42-Page ARPA-H Policy Report, Generated in One Session](https://www.k-dense.ai/blog/arpa-h-policy-report-analysis) | Long-form report with figures and verified citations |
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### Hosted sibling and FAQ
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| Post | Why it is relevant |
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|------|-------------------|
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| [Introducing K-Dense Web: Research. Analyze. Synthesize.](https://www.k-dense.ai/blog/introducing-k-dense-web) | The hosted product for end-to-end research plus writing |
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| [AI Co-Scientists, Answered: 20 Questions from a Live Session](https://www.k-dense.ai/blog/ai-co-scientists-answered-20-questions) | What the stack does today, and where it still falls short |
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| [K-Dense Web vs. Claude Science](https://www.k-dense.ai/blog/k-dense-web-vs-claude-science) | Execution and scientific-quality scores on 20 research tasks |
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Browse every post at [www.k-dense.ai/blog](https://www.k-dense.ai/blog).
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## Use with Antigravity, Pi, and Other Agents
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This repository is a conformant [Agent Plugins](https://agent-plugins.org/) 1.0.0 package, the
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### Manual approach
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For an agent that does not load Agent Plugins packages (Antigravity, Pi, Aider, Continue, etc.), load a single skill by hand:
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For an agent that does not load Agent Plugins packages (Antigravity, Pi, Aider, Continue, etc.), load a single skill by hand. A worked example of importing scientific-writing and literature-review skills into another host is [How to Use Multica for Scientific Research](https://www.k-dense.ai/blog/multica-scientific-research).
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1. Open the relevant `skills/<skill-name>/SKILL.md` file.
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2. Copy the content below the YAML frontmatter (everything after the closing `---`).
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## Support
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- Open an issue on GitHub
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- See [docs/TROUBLESHOOTING.md](docs/TROUBLESHOOTING.md) for common problems
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- Read related walkthroughs on the [K-Dense blog](https://www.k-dense.ai/blog)
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## 💬 Join Our Community!
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**Follow us for updates:** [X](https://x.com/k_dense_ai) · [LinkedIn](https://www.linkedin.com/company/k-dense-inc) · [YouTube](https://www.youtube.com/@K-Dense-Inc)
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**Follow us for updates:** [Blog](https://www.k-dense.ai/blog) · [X](https://x.com/k_dense_ai) · [LinkedIn](https://www.linkedin.com/company/k-dense-inc) · [YouTube](https://www.youtube.com/@K-Dense-Inc)
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**Want to connect with other researchers, share tips, and get help in real-time?** Join our vibrant Slack community! 🎉
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