Release 4.0.1 #405
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| name: Unit tests without external tools | |
| on: | |
| push: | |
| branches: [ main, develop ] | |
| pull_request: | |
| branches: [ main, develop ] | |
| jobs: | |
| tests: | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, macos-latest] | |
| python-version: ['3.11', '3.12'] | |
| runs-on: ${{ matrix.platform }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Miniconda | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: test | |
| auto-activate-base: false | |
| - name: Install epytope | |
| shell: bash -el {0} | |
| # --no-cache-dir avoids a corrupt runner pip cache making a present | |
| # package look unavailable ("from versions: none"); retries/timeout | |
| # harden against transient PyPI index hiccups. | |
| run: | | |
| pip install --no-cache-dir --retries 5 --timeout 60 "numpy<2" | |
| pip install --no-cache-dir --retries 5 --timeout 60 ".[dev]" | |
| - name: Install Test dependencies | |
| shell: bash -el {0} | |
| run: | | |
| conda install -c conda-forge glpk | |
| - name: Download PyEnsembl data | |
| shell: bash -el {0} | |
| run: | | |
| pyensembl install --release 75 --species human | |
| - name: Run Tests | |
| shell: bash -el {0} | |
| run: pytest epytope/test/ --ignore=epytope/test/external -v |