Merge pull request #76 from LadnerLab/feat/bkp-seeded-run

fix: made top-k enrichment plot notebook more general

Author: jeffreyHoelzel

…oks/cwp_topk_reactivity_enrichment.ipynb …tebooks/topk_reactivity_enrichment.ipynbnotebooks/cwp_topk_reactivity_enrichment.ipynb renamed to notebooks/topk_reactivity_enrichment.ipynb notebooks/cwp_topk_reactivity_enrichment.ipynb renamed to notebooks/topk_reactivity_enrichment.ipynb

@@ -2,11 +2,12 @@
   "cells": [
     {
       "cell_type": "markdown",
+      "id": "dcf13676",
       "metadata": {},
       "source": [
-        "# CWP Top-K Reactivity Enrichment (v1)\n",
+        "# Top-K Reactivity Enrichment (v1)\n",
         "\n",
-        "This notebook demonstrates practical downselection value by ranking CWP peptides, then plotting cumulative proportion reactive vs selected peptides (Top-K), with a full-library baseline.\n",
+        "This notebook demonstrates practical downselection value by ranking CWP or BKP peptides, then plotting cumulative proportion reactive vs selected peptides (Top-K), with a full-library baseline.\n",
         "\n",
         "v1 uses current pulled artifacts only (`PredOnes` from `peptide_comparison.csv`) and does not modify pipeline behavior."
       ]
@@ -34,9 +35,11 @@
       "outputs": [],
       "source": [
         "# Parameterized config\n",
-        "base_dir = Path(\"localdata/evals/cocci_eval/seeded_runs\")\n",
+        "# base_dir = Path(\"data/evals/cwp_eval/seeded_runs\")\n",
+        "base_dir = Path(\"data/evals/bkp_eval/seeded_runs\")\n",
+        "# model_id = \"flagship1\"\n",
         "model_id = \"flagship2\"\n",
-        "set_id = \"set_01\"\n",
+        "set_id = \"set_09\"\n",
         "mode = \"combined\"\n",
         "\n",
         "k_start = 500\n",