publications.bib

@techreport{Lennon_etal_2025c,
  author = {Lennon JT and 32 others},
  title = {Colloquium report: Water, waterborne pathogens and public health: environmental drivers},
  year = {2025},
  institution = {American Society for Microbiology},
  address = {Washington, DC},
  note = {\href{https://asm.org/reports/water-waterborne-pathogens-and-public-health-envi}{(link)}}
}

@aritcle{Bogar_etal_2025,
  author = {Bogar G, Lennon JT, Vander Stel H, Evan SE},
  title = {Simple, rapid, and sensitive assay for the quantification of total polysaccharides
to estimate extracellular polymeric substances (EPS) in soil},
  journal = {bioRxiv},
  year = {2025},
  doi = {10.1101/2025.05.22.654594 },
  note = {\href{https://www.biorxiv.org/content/10.1101/2025.05.22.654594v1}{(pdf)}}
}

@aritcle{Overcast_etal_2025,
  author = {Overcast I, Calderon-Sanou I, Creer S, Dominguez-Garcia V, Hagen O, Hickerson MI, Jörger-Hickfang T, Krehenwinkel H, Lennon JT, Méndez L, Méndez M, Onstein R, Pereira H, Qin C, Winter M, Yu DW, Zurell D, Gillespie R},
  title = {The distribution of genetic diversity in ecological communities: A unifying measure for monitoring biodiversity change},
  journal = {EcoEvoRxiv},
  year = {2025},
  doi = {10.32942/X2Z64W},
  note = {\href{https://ecoevorxiv.org/repository/view/9169/}{(pdf)}}
}

@article{Wang_etal_2025,
  author = {Wang J, Hu A, Cui Y, Bercovici SK, Lennon JT, Soininen J, Liu Y, Jiao N},
  title = {Geographical patterns and drivers of dissolved organic matter in the global ocean},
  journal = {Research Square},
  year = {2025},
  doi = {10.21203/rs.3.rs-6624570/v1},
  note = {\href{https://assets-eu.researchsquare.com/files/rs-6624570/v1/a75822e6-0649-4c95-919e-3ba016f0bc96.pdf?c=1747022553}{(pdf)}}
}

@article{Lennon_etal_2025a,
  author = {Lennon, JT and Rappuoli, R and Bloom, DE and Brooks, CG and Egamberdieva, D and Lawley, TD and Morhard, R and Mukhopadhyay, A and Nguyen, N and Peixoto, RS and Silver, PA and Stein, LY},
  title = {Microbial solutions for climate change require global partnership},
  journal = {mBio},
  year = {2025},
  volume = {16},
  doi = {10.1128/mbio.00778-25},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2025a.pdf}{(pdf)}}
}

@article{Rappuoli_etal_2025a,
  author = {Rappuoli, R and Nguyen, N and Bloom, DE and Brooks, CG and Egamberdieva, D and Lawley, TD and Morhard, R and Mukhopadhyay, A and Lennon, JT and Peixoto, RS and Silver, PA and Stein, LY},
  title = {Microbes can capture carbon and degrade plastic — why aren’t we using them more?},
  journal = {Nature},
  year = {2025},
  volume = {639},
  pages = {864--866},
  note = {\href{https://lennonlab.github.io/assets/publications/Rappuoli_etal_2025a.pdf}{(pdf)}}
}

@article{Lennon_etal_2025b,
  author = {Lennon, JT and Lehmkuhl, BK and Chen, L and Illingworth, M and Kuo, V and Muscarella, ME},
  title = {Resuscitation-promoting factor (Rpf) terminates dormancy among diverse soil bacteria},
  journal = {mSystems},
  year = {2025},
  volume = {10},
  doi = {10.1128/msystems.01517-24},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2025b.pdf}{(pdf)}}
}

@article{Rappuoli_etal_2025b,
  author = {Rappuoli, R and Nguyen, N and Bloom, DE and Brooks, CG and Egamberdieva, D and Lawley, TD and Morhard, R and Mukhopadhyay, A and Lennon, JT and Peixoto, RS and Silver, PA and Stein, LY},
  title = {Microbial solutions for climate change — Toward an economically resilient future},
  journal = {American Society for Microbiology},
  year = {2025},
  note = {\href{https://lennonlab.github.io/assets/publications/Rappuoli_etal_2025b.pdf}{(pdf)}}
}

@unpublished{McGill_etal_inreview,
  author = {McGill B and Jarzyna M and Diaz R and Barnes C and Diaz FH and Economo E and French C and Hagen O and James H and Kivlin S and Lahiri S and Lennon JT and Mascarenhas R and Ohyama L and Rabosky DL and Zhu K and Hickerson M and Gillespie R},
  title = {A call to develop a coherent discipline of biodiversity science to address global change},
  note = {In review}
}


@article{Magalie_etal_2024,
  author = {Magalie, A and Marantos, A and Schwartz, DA and Marchi, J and Lennon, JT and Weitz, JS},
  title = {Phage infection fronts trigger early sporulation and collective defense in bacterial populations},
  journal = {bioRxiv},
  year = {2024},
  note = {\href{https://www.biorxiv.org/content/10.1101/2024.05.22.595388v1.full.pdf}{(pdf)}}
}

@article{Hill_etal_2024,
  author = {Hill, CA and McMullen, JC and Lennon, JT},
  title = {Nitrogen enrichment alters selection on rhizobial genes},
  journal = {bioRxiv},
  year = {2024},
  note = {\href{https://www.biorxiv.org/content/10.1101/2024.11.25.625319v1.full.pdf}{(pdf)}}
}

@article{Hu_etal_2024,
  author = {Hu A, Cui Y, Bercovici F, Tanentzap AJ, Lennon JT, Lin X, Yang Y, Liu Y, Osterholz H, Dong H, Lu Y, Jiao N, Wang J},
  title = {Photochemical processes drive thermal responses of dissolved organic matter in the dark ocean},
  journal = {bioRxiv},
  year = {2024},
  note = {\href{https://www.biorxiv.org/content/10.1101/2024.09.06.611638v1.full.pdf}{(pdf)}}
}

@article{Mueller_Lennon_2024,
  author = {Mueller, EA and Lennon, JT},
  title = {Residence time structures microbial communities through niche partitioning},
  journal = {Ecology Letters},
  year = {2024},
  volume = {28},
  pages = {e70093},
  note = {\href{https://lennonlab.github.io/assets/publications/Mueller_Lennon_2025.pdf}{(pdf)}}
}

@article{Nevermann_etal_2024,
  author = {Nevermann, HD and Gros, C and Lennon, JT},
  title = {A game of life with dormancy},
  journal = {Proceedings of the Royal Society B},
  year = {2024},
  volume = {292},
  pages = {20242543},
  note = {\href{https://lennonlab.github.io/assets/publications/Nevermann_etal_2025.pdf}{(pdf)}}
}

@article{Zang_etal_2025,
  author = {Zang Z and Zhang C and Park KJ and Schwartz DA and Podicheti R and Lennon JT and Gerdt JP},
  title = {Streptomyces secretes a siderophore that sensitizes competitor bacteria to phage infection},
  journal = {Nature Microbiology},
  year = {2025},
  doi = {10.1038/s41564-024-01910-8},
  note = {\href{https://lennonlab.github.io/assets/publications/Zang_etal_2025.pdf}{(pdf)}}
}

@article{Beattie_etal_2025,
  author = {Beattie GA and Edlund A and Esiobu N and Gilbert J and Nicolaisen MH and Jansson JK and Jensen P and Keiluwei M and Lennon JT and Martiny JBH and Minnisi VR and Newmann D and Peixoto R and Schadt C and van der Meer JR},
  title = {Soil microbiome interventions for carbon sequestration and climate mitigation},
  journal = {mSystems},
  year = {2025},
  note = {\href{https://lennonlab.github.io/assets/publications/Beattie_etal_2025.pdf}{(pdf)}}
}

@article{Webster_Lennon_2025,
  author = {Webster, KD and Lennon, JT},
  title = {Dormancy in the origin, evolution, and persistence of life on Earth},
  journal = {Proceedings of the Royal Society B: Biological Sciences},
  year = {2025},
  volume = {292},
  pages = {20242035},
  note = {\href{https://lennonlab.github.io/assets/publications/Webster_Lennon_2025.pdf}{(pdf)}}
}

@article{Peixoto_etal_2024,
  author = {Peixoto R and Voolstra CR and Stein LY and Hugenholtz P and Salles JF and Amin SA and Häggblom M and Gregory A and Makhalanyane TP and Wang F and Agbodjato NA and Wang Y and Jiao N and Lennon JT and Ventosa A and Bavoil PM and Miller V and Gilbert JA},
  title = {Microbiology at the brink: a unified call for action against climate catastrophe},
  journal = {Multiple journals},
  year = {2024},
  note = {
    Nature Microbiology 9: 3084--3085 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024a.pdf}{(pdf)}; \\
    Nature Communications 15: 9637 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024b.pdf}{(pdf)}; \\
    Nature Reviews Microbiology 23: 1--2 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024c.pdf}{(pdf)}; \\
    Nature Reviews Earth and Environment 6: 4--5 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024d.pdf}{(pdf)}; \\
    ISMEJ 18: wrae219 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024e.pdf}{(pdf)}; \\
    mSystems 11: e0141624 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024f.pdf}{(pdf)}; \\
    Communications Biology 7: 1466 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024g.pdf}{(pdf)}; \\
    Communications Earth and Environment 5: 672 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024h.pdf}{(pdf)}; \\
    FEMS Microbiology Ecology 100: fiae144 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024i.pdf}{(pdf)}; \\
    NPJ Biodiversity 3: 34 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024j.pdf}{(pdf)}; \\
    NPJ Biofilms and Microbiomes 10: 122 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024k.pdf}{(pdf)}; \\
    NPJ Sustainable Agriculture 2: 23 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024l.pdf}{(pdf)}; \\
    NPJ Climate Action 3: 1--3 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024m.pdf}{(pdf)}; \\
    Sustainable Microbiology 1: qvae029 \href{https://lennonlab.github.io/assets/publications/Peixoto_etal_2024n.pdf}{(pdf)}
  }
}

@article{Waldrop_2025,
  author = {Waldrop MP and Ernakovich JG and Vishnivetskaya TA and Schaefer SR and Mackleprang R and Bara J and O'Brien JM and Winkel M and Barbato RA and Heffernan L and Leewis MC and Hewitt RE and Hultman J and Sun Y and Biasi C and Bradley JA and Liebner S and Ricketts MP and Muscarella ME and Schütte U and Abuah F and Whalen E and Timling I and Voight C and Taş N and Lloyd KG and Silganen HMP and Rivkina EM and Voříšková J and Tao J and Liang R and Lennon JT and Onstott TC},
  title = {Microbial ecology of permafrost soils: populations, processes, and perspectives},
  journal = {Permafrost and Periglacial Processes},
  year = {2025},
  note = {\href{https://lennonlab.github.io/assets/publications/Waldrop_etal_2025.pdf}{(pdf)}}
}

@article{Wu_etal_2024,
  author = {Wu, W and Hsieh, C and Logares, R and Lennon, JT and Liu, H},
  title = {Ecological processes shaping highly connected bacterial communities along strong environmental gradients},
  journal = {FEMS Microbiology Ecology},
  year = {2024},
  volume = {100},
  pages = {fiae146},
  note = {\href{https://lennonlab.github.io/assets/publications/Wu_etal_2024.pdf}{(pdf)}}
}

@article{Beattie_2024,
  author = {Beattie GA and Cotrufo FM and Crowther TW and Edlund A and Salles JF and Gilbert JK and Jansson JK and Jensen PR and Lennon JT and Makhalanyane T and Martiny JBH and Newman DK and Stevenson M},
  title = {Soil microbial strategies for climate mitigation: Report from a climate action workshop in Las Vegas, Nevada, February 2024},
  journal = {Sustainable Microbiology},
  year = {2024},
  volume = {1},
  pages = {qvae033},
  note = {\href{https://lennonlab.github.io/assets/publications/Beattie_etal_2024.pdf}{(pdf)}}
}

@article{Hu_2024_NatComms,
  author = {Hu A and Jang KS and Tanentzap AJ and Zhao W and Lennon JT and Liu J and Li M and Stegen JC and Choi M and Lu Y and Feng X and Wang J},
  title = {Thermal responses of dissolved organic matter under global change},
  journal = {Nature Communications},
  year = {2024},
  volume = {15},
  pages = {576},
  note = {\href{https://lennonlab.github.io/assets/publications/Hu_etal_2024.pdf}{(pdf)}}
}

@article{Lennon_2024_mBio,
  author = {Lennon JT and Abramoff RZ and Allison SD and Burckhardt RM and DeAngelis KM and Dunne JP and Frey SD and Friedlingstein P and Hawkes CV and Hungate BA and Khurana S and Kivlin SN and Levine N and Manzoni S and Martiny AC and Martiny JBH and Nguyen N and Rawat M and Talmy D and Todd-Browne K and Vogt M and Wieder WR and Zakem E},
  title = {Priorities, opportunities, and challenges for integrating microorganisms into Earth system models for climate change prediction},
  journal = {mBio},
  year = {2024},
  volume = {15},
  pages = {e00455-24},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2024.pdf}{(pdf)}}
}

@article{Moger-Reischer_2023,
  author = {Moger-Reischer RZ and Glass JI and Wise KS and Sun L and Bittencourt DMC and Lehmkuhl BK and Schoolmaster DR Jr and Lynch M and Lennon JT},
  title = {Evolution of a minimal cell},
  journal = {Nature},
  year = {2023},
  volume = {620},
  pages = {122--127},
  note = {\href{https://lennonlab.github.io/assets/publications/Moger-Reischer_etal_2023.pdf}{(pdf)}}
}

@article{Schwartz_etal_2023b,
  author = {Schwartz DA and Shoemaker WR and Magalie A and Weitz JS and Lennon JT},
  title = {Bacteria-phage coevolution with a seed bank},
  journal = {ISMEJ},
  year = {2023},
  volume = {17},
  pages = {1315--1325},
  note = {\href{https://lennonlab.github.io/assets/publications/Schwartz_etal_2023b.pdf}{(pdf)}}
}

@article{Fishman_Lennon_2023,
  author = {Fishman FJ and Lennon JT},
  title = {Macroevolutionary constraints on global microbial diversity},
  journal = {Ecology and Evolution},
  year = {2023},
  volume = {13},
  pages = {e10403},
  note = {\href{https://lennonlab.github.io/assets/publications/Fishman_Lennon_2023.pdf}{(pdf)}}
}

@article{Zhou_etal_2023,
  author = {Zhou X and Lennon JT and Lu X and Ruan A},
  title = {Anthropogenic activities mediate stratification and stability of microbial communities in freshwater sediments},
  journal = {Microbiome},
  year = {2023},
  volume = {11},
  pages = {191},
  note = {\href{https://lennonlab.github.io/assets/publications/Zhou_etal_2023.pdf}{(pdf)}}
}

@article{Schwartz_etal_2023a,
  author = {Schwartz DA and Rodriguez-Ramos J and Shaffer M and Flynn F and Daly R and Wrighton KC and Lennon JT},
  title = {Human-gut phages harbor sporulation genes},
  journal = {mBio},
  year = {2023},
  pages = {e0018223},
  note = {\href{https://lennonlab.github.io/assets/publications/Schwartz_etal_2023a.pdf}{(pdf)}}
}

@article{Wisnoski_Lennon_2023,
  author = {Wisnoski NI and Lennon JT},
  title = {Scaling up and down: movement ecology for microorganisms},
  journal = {Trends in Microbiology},
  year = {2023},
  volume = {31},
  pages = {242--253},
  note = {\href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2023.pdf}{(pdf)}}
}

@article{Magalie_etal_2023,
  author = {Magalie A and Schwartz DA and Lennon JT and Weitz JS},
  title = {Optimal dormancy strategies in fluctuating environments given delays in phenotypic switching},
  journal = {Journal of Theoretical Biology},
  year = {2023},
  volume = {561},
  pages = {111413},
  note = {\href{https://lennonlab.github.io/assets/publications/Magalie_etal_2023.pdf}{(pdf)}}
}

@article{Lennon_etal_2023,
  author = {Lennon JT and Frost SDW and Nguyen NK and Peralta AL and Place AR and Treseder KK},
  title = {Microbiology and climate change: a transdisciplinary imperative},
  journal = {mBio},
  year = {2023},
  volume = {13},
  pages = {e0335-22},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2023.pdf}{(pdf)}}
}

@article{Bolin_etal_2023,
  author = {Bolin LG and Lennon JT and Lau JA},
  title = {Traits of soil bacteria predict plant responses to soil moisture},
  journal = {Ecology},
  year = {2023},
  volume = {104},
  pages = {e3893},
  note = {\href{https://lennonlab.github.io/assets/publications/Bolin_etal_2023.pdf}{(pdf)}}
}

@article{Irvine_etal_2023,
  author = {Irvine R and Houser M and Marquart-Pyatt ST and Bolin L and Browning EG and Dott G and Evans SE and Howard M and Lau J and Lennon JT},
  title = {Soil health through farmers’ eyes: Toward a better understanding of how farmers view, value, and manage for healthier soils},
  journal = {Journal of Soil and Water Conservation},
  year = {2023},
  volume = {78},
  pages = {82--92},
  note = {\href{https://lennonlab.github.io/assets/publications/Irvine_etal_2023.pdf}{(pdf)}}
}

@article{McMullen_Lennon_2023,
  author = {McMullen JG and Lennon JT},
  title = {Mark-recapture of microorganisms},
  journal = {Environmental Microbiology},
  year = {2023},
  volume = {25},
  pages = {150--157},
  note = {\href{https://lennonlab.github.io/assets/publications/McMullen_Lennon_2023.pdf}{(pdf)}}
}

@patent{Lennon_etal_2023a,
  author = {Lennon JT and van der Elst LA and Mueller EA and Gumennik A},
  title = {Gut bioreactor and method for making the same},
  year = {2023},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2023b.pdf}{(pdf)}},
  number = {US Patent 11,840,681 B2}
}

@techreport{Lennon_etabl_2023b,
  author = {Lennon JT and 28 others},
  title = {Colloquium report: Microbes in models: integrating microbes into earth system models for understanding climate change},
  year = {2023},
  institution = {American Society for Microbiology},
  address = {Washington, DC},
  note = {\href{https://www.ncbi.nlm.nih.gov/books/NBK592518/}{(link)}}
}

@techreport{Lennon_etal_2023c,
  author = {Lennon JT and 28 others},
  title = {Colloquium report: The role of microbes in mediating methane emissions},
  year = {2023},
  institution = {American Society for Microbiology},
  address = {Washington, DC},
  note = {\href{https://pubmed.ncbi.nlm.nih.gov/38194471/}{(link)}}
}

@article{Webster_etal_2022,
  author = {Webster KD and Schimmelmann A and Drobniak A and Mastalerz M and Lagarde LR and Boston PJ and Lennon JT},
  title = {Diversity and composition of cave methanotrophic communities},
  journal = {Microbiology Spectrum},
  year = {2022},
  volume = {10},
  pages = {e0156621},
  note = {\href{https://lennonlab.github.io/assets/publications/Webster_etal_2022.pdf}{(pdf)}}
}

@article{Schwartz_etal_2022,
  author = {Schwartz DA and Lekmkuhl BK and Lennon JT},
  title = {Phage-encoded sigma factors alter bacterial dormancy},
  journal = {mSphere},
  year = {2022},
  pages = {e00927-22},
  note = {\href{https://lennonlab.github.io/assets/publications/Schwartz_etal_2022.pdf}{(pdf)}}
}

@article{Shoemaker_etal_2022,
  author = {Shoemaker WR and Polezhaeva E and Givens KB and Lennon JT},
  title = {Seed banks alter the molecular evolutionary dynamics of Bacillus subtilis},
  journal = {Genetics},
  year = {2022},
  volume = {221},
  pages = {iyac071},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2022.pdf}{(pdf)}}
}

@article{Hu_etal_2022a,
  author = {Hu A and Choi M and Tanentzap AJ and Liu J and Jang KS and Lennon JT and Liu Y and Soininen J and Lu X and Zhang Y and Shen J and Wang J},
  title = {Ecological networks of dissolved organic matter and microorganisms under global change},
  journal = {Nature Communications},
  year = {2022},
  volume = {13},
  pages = {3699},
  note = {\href{https://lennonlab.github.io/assets/publications/Hu_etal_2022a.pdf}{(pdf)}}
}

@article{Hu_etal_2022b,
  author = {Hu A and Jang KS and Meng F and Stegen J and Tanentzap AJ and Choi M and Lennon JT and Soinenen J and Wang J},
  title = {Microbial and environmental processes shape the link between organic matter functional traits and composition},
  journal = {Environmental Science and Technology},
  year = {2022},
  volume = {56},
  pages = {10504--10516},
  note = {\href{https://lennonlab.github.io/assets/publications/Hu_etal_2022b.pdf}{(pdf)}}
}

@article{Krause_etal_2022,
  author = {Krause SMB and Bertilsson S and Grossart HP and Bodelier PLE and van Bodegom P and Lennon JT and Philippot L and Le Roux X},
  title = {Microbial trait-based approaches for agroecosystems},
  journal = {Advances in Agronomy},
  year = {2022},
  volume = {175},
  pages = {260--299},
  note = {\href{https://lennonlab.github.io/assets/publications/Krause_etal_2022.pdf}{(pdf)}}
}

@article{Shoemaker_Lennon_2022,
  author = {Shoemaker WR and Lennon JT},
  title = {Predicting parallelism and quantifying divergence in experimental evolution},
  journal = {mSphere},
  year = {2022},
  volume = {7},
  pages = {e00672-21},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_Lennon_2022.pdf}{(pdf)}}
}

@article{Shoemaker_etal_2021b,
  author = {Shoemaker WR and Jones SE and Muscarella ME and Behringer MG and Lehmkuhl BK and Lennon JT},
  title = {Microbial population dynamics and evolutionary outcomes under extreme energy-limitation},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2021},
  volume = {118},
  pages = {e2101691118},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021b.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Rillig_etal_2021.pdf}{(PNAS Commentary)}, \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021b_Suppl.pdf}{(Supplementary Information)}}
}

@article{Lennon_etal_2021a,
  author = {Lennon JT and den Hollander F and Wilke-Berenguer M and Blath J},
  title = {Principles of seed banks: complexity emerging from dormancy},
  journal = {Nature Communications},
  year = {2021},
  volume = {2},
  pages = {4807},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2021a.pdf}{(pdf)}}
}

@article{Wisnoski_Lennon_2021,
  author = {Wisnoski NI and Lennon JT},
  title = {Stabilising role of seed banks and the maintenance of bacterial diversity},
  journal = {Ecology Letters},
  year = {2021},
  volume = {24},
  pages = {2328--2338},
  note = {\href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2021.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2021_Suppl.pdf}{(Supplementary Information)}}
}

@article{Shoemaker_etal_2021a,
  author = {Shoemaker WR and Polezhaeva E and Givens KB and Lennon JT},
  title = {Molecular evolutionary dynamics of energy limited microorganisms},
  journal = {Molecular Biology and Evolution},
  year = {2021},
  volume = {38},
  pages = {msab195},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021a.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2021a_Suppl.zip}{(Supplementary Information)}}
}

@article{Lamit_etal_2021,
  author = {Lamit LJ and Romanowicz KJ and Potvin LR and Lennon JT and Tringe SG and Chimner RA and Kolka RK and Kane ES and Lilleskov EA},
  title = {Peatland microbial community responses to plant functional group and drought are depth-dependent},
  journal = {Molecular Ecology},
  year = {2021},
  volume = {30},
  pages = {5119--5136},
  note = {\href{https://lennonlab.github.io/assets/publications/Lamit_etal_2021.pdf}{[pdf]}}
}

@article{Kuo_etal_2021,
  author = {Kuo V and Lehmkuhl BK and Lennon JT},
  title = {Resuscitation of the microbial seed bank alters plant-soil interactions},
  journal = {Molecular Ecology},
  year = {2021},
  volume = {30},
  pages = {2905--2914},
  note = {\href{https://lennonlab.github.io/assets/publications/Kuo_etal_2021.pdf}{[pdf]}}
}

@article{Wisnoski_Lennon_2020,
  author = {Wisnoski NI and Lennon JT},
  title = {Microbial community assembly in a multi-layer dendritic metacommunity},
  journal = {Oecologia},
  year = {2020},
  volume = {195},
  pages = {13--24},
  note = {\href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2020.pdf}{[pdf]}}
}

@article{Mobilian_etal_2020,
  author = {Mobilian C and Wisnoski NI and Lennon JT and Abler M and Widney S and Craft CB},
  title = {Differential effects of press vs. pulse seawater intrusion on microbial communities of a tidal freshwater marsh},
  journal = {Limnology and Oceanography Letters},
  year = {2020},
  volume = {8},
  pages = {154--161},
  note = {\href{https://lennonlab.github.io/assets/publications/Mobilian_etal_2020.pdf}{[pdf]}}
}

@article{Muscarella_etal_2020,
  author = {Muscarella ME and Howey XM and Lennon JT},
  title = {Trait-based approach to bacterial growth efficiency},
  journal = {Environmental Microbiology},
  year = {2020},
  volume = {22},
  pages = {3494--3504},
  note = {\href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2020.pdf}{[pdf]}}
}

@article{MogerReischer_etal_2020,
  author = {Moger-Reischer RZ and Snider EZ and McKenzie KL and Lennon JT},
  title = {Low costs of adaptation to dietary restriction},
  journal = {Biology Letters},
  year = {2020},
  volume = {16},
  pages = {20200008},
  note = {\href{https://lennonlab.github.io/assets/publications/Moger-Reischer_etal_2020.pdf}{[pdf]}}
}

@article{Locey_etal_2020,
  author = {Locey KJ and Muscarella ME and Larsen ML and Bray SR and Jones SE and Lennon JT},
  title = {Dormancy dampens the microbial distance-decay relationship},
  journal = {Philosophical Transactions of the Royal Society B},
  year = {2020},
  volume = {375},
  pages = {20190243},
  note = {\href{https://lennonlab.github.io/assets/publications/Locey_etal_2020.pdf}{[pdf]}}
}

@article{Lennon_Locey_2020,
  author = {Lennon JT and Locey KJ},
  title = {More evidence for Earth's massive microbiome},
  journal = {Biology Direct},
  year = {2020},
  volume = {15},
  pages = {5},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Locey_2020.pdf}{[pdf]}}
}

@article{Lennon_2020,
  author = {Lennon JT},
  title = {Microbial life underfoot},
  journal = {mBio},
  year = {2020},
  volume = {11},
  pages = {e03201-19},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_2020.pdf}{[pdf]}}
}

@article{Wisnoski_etal_2020,
  author = {Wisnoski NI and Muscarella ME and Larsen ML and Peralta AP and Lennon JT},
  title = {Metabolic insight into bacterial community assembly across ecosystem boundaries},
  journal = {Ecology},
  year = {2020},
  volume = {101},
  pages = {e02968},
  note = {\href{https://lennonlab.github.io/assets/publications/Wisnoski_etal_2020.pdf}{[pdf]}}
}

@article{Yin_etal_2020,
  author = {Yin Y and Masalerz M and Lennon JT and Drobniak A and Schimmelmann A},
  title = {Characterization and microbial mitigation of fugitive methane emissions from oil and gas wells: Example from Indiana, USA},
  journal = {Applied Geochemistry},
  year = {2020},
  volume = {118},
  pages = {104619},
  note = {\href{https://lennonlab.github.io/assets/publications/Yin_etal_2020.pdf}{(pdf)}}
}

@article{Mueller_etal_2019,
  author = {Mueller EA and Wisnoski NI and Peralta AL and Lennon JT},
  title = {Microbial rescue effects: how microbiomes can save hosts from extinction},
  journal = {Functional Ecology},
  year = {2019},
  volume = {34},
  pages = {2055--2064},
  note = {\href{https://lennonlab.github.io/assets/publications/Mueller_etal_2019.pdf}{(pdf)}}
}

@article{MogerReischer_Lennon_2019,
  author = {Moger-Reischer RZ and Lennon JT},
  title = {Microbial aging and longevity},
  journal = {Nature Reviews Microbiology},
  year = {2019},
  volume = {17},
  pages = {79--690},
  note = {\href{https://lennonlab.github.io/assets/publications/Moger-Reischer_Lennon_2019.pdf}{(pdf)}}
}

@article{Wisnoski_etal_2019,
  author = {Wisnoski NI and Leibold MA and Lennon JT},
  title = {Dormancy in metacommunities},
  journal = {American Naturalist},
  year = {2019},
  volume = {194},
  pages = {131--151},
  note = {\href{https://lennonlab.github.io/assets/publications/Wisnoski_etal_2019.pdf}{(pdf)}}
}

@article{Salazar_etal_2019,
  author = {Salazar A and Lennon JT and Dukes JS},
  title = {Microbial activity improves predictability of soil respiration dynamics},
  journal = {Biogeochemistry},
  year = {2019},
  volume = {144},
  pages = {103--116},
  note = {\href{https://lennonlab.github.io/assets/publications/Salazar_etal_2019.pdf}{(pdf)}}
}

@article{Muscarella_etal_2019,
  author = {Muscarella ME and Boot CM and Broeckling CD and Lennon JT},
  title = {Resource diversity structures aquatic bacterial communities},
  journal = {ISMEJ},
  year = {2019},
  volume = {13},
  pages = {2183--2195},
  note = {\href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2019.pdf}{(pdf)}}
}

@article{Larsen_etal_2019,
  author = {Larsen ML and Wilhelm SW and Lennon JT},
  title = {Nutrient stoichiometry shapes microbial coevolution},
  journal = {Ecology Letters},
  year = {2019},
  volume = {22},
  pages = {1009--1018},
  note = {\href{https://lennonlab.github.io/assets/publications/Larsen_etal_2019.pdf}{(pdf)}}
}

@article{Locey_Lennon_2019,
  author = {Locey KJ and Lennon JT},
  title = {A residence-time framework for biodiversity},
  journal = {American Naturalist},
  year = {2019},
  volume = {194},
  pages = {59--72},
  note = {\href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2019.pdf}{(pdf)}}
}

@article{Sprunger_etal_2019,
  author = {Sprunger CD and Culman SW and Peralta AP and DuPont ST and Lennon JT and Snapp SS},
  title = {Perennial grain crop roots and nitrogen management shape soil food webs and soil carbon dynamics},
  journal = {Soil Biology and Biochemistry},
  year = {2019},
  volume = {137},
  pages = {107573},
  note = {\href{https://lennonlab.github.io/assets/publications/Sprunger_etal_2019.pdf}{(pdf)}}
}

@article{Shade_etal_2018,
  author = {Shade A and Dunn RR and Blowes SA and Keil P and Bohannan BMJ and Hermann M and Küsel K and Lennon JT and Sanders NJ and Storch D and Chase J},
  title = {Macroecology to unite all biodiversity great and small},
  journal = {Trends in Ecology and Evolution},
  year = {2018},
  volume = {33},
  pages = {731--744},
  note = {\href{https://lennonlab.github.io/assets/publications/Shade_etal_2018.pdf}{(pdf)}}
}

@article{Lennon_etal_2018a,
  author = {Lennon JT and Muscarella ME and Placella SA and Lehmkuhl BK},
  title = {How, when, and where relic DNA biases estimates of microbial diversity},
  journal = {mBio},
  year = {2018},
  volume = {9},
  pages = {e00637-18},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2018.pdf}{(pdf)}}
}

@article{Shoemaker_Lennon_2018,
  author = {Shoemaker WR and Lennon JT},
  title = {Evolution with a seed bank: the population genetic consequences of microbial dormancy},
  journal = {Evolutionary Applications},
  year = {2018},
  volume = {11},
  pages = {60--75},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_Lennon_2018.pdf}{(pdf)}}
}

@article{Hall_etal_2018,
  author = {Hall EK and Bernhardt ES and Bier R and Bradford MA and Boot CM and Cotner JB and del Giorgio PA and Evans SE and Graham EB and Jones SE and Lennon JT and Nemergut D and Osborne B and Rocca JD and Schimel JS and Waldrop MS and Wallenstein MW},
  title = {Understanding how microbiomes influence the systems they inhabit},
  journal = {Nature Microbiology},
  year = {2018},
  volume = {3},
  pages = {977--982},
  note = {\href{https://lennonlab.github.io/assets/publications/Hall_etal_2018.pdf}{(pdf)}}
}

@misc{Lennon_Locey_2018,
  author = {Lennon JT and Locey KJ},
  title = {There are more microbial species on Earth than stars in the galaxy},
  note = {\href{https://aeon.co/ideas/there-are-more-microbial-species-on-earth-than-stars-in-the-sky}{(link)}},
  year = {2018},
  journal = {Aeon}
}

@article{Peralta_etal_2018,
  author = {Peralta AL and Sun Y and McDaniel MD and Lennon JT},
  title = {Crop diversity increases disease suppressive capacity of soil microbiomes},
  journal = {Ecosphere},
  year = {2018},
  volume = {9},
  pages = {e02235},
  note = {\href{https://lennonlab.github.io/assets/publications/Peralta_etal_2018.pdf}{(pdf)}}
}

@article{Long_etal_2018,
  author = {Long H and Sung W and Kucukyildirim S and Williams E and Miller S and Guo W and Patterson C and Gregory C and Strauss C and Stone C and Berne C and Kysela D and Shoemaker WR and Muscarella M and Luo H and Lennon JT and Brun YV and Lynch M},
  title = {Evolutionary determinants of genome-wide nucleotide composition},
  journal = {Nature Ecology and Evolution},
  year = {2018},
  volume = {2},
  pages = {237--240},
  note = {\href{https://lennonlab.github.io/assets/publications/Long_etal_2018.pdf}{(pdf)}}
}

@article{Schimmelmann_etal_2018,
  author = {Schimmelmann A and Streil T and Fernandez-Cortes A and Cuezva S and Lennon JT},
  title = {Radiolysis via radioactivity is not responsible for rapid methane oxidation in subterranean air},
  journal = {PLOS ONE},
  year = {2018},
  volume = {113},
  pages = {020650},
  note = {\href{https://lennonlab.github.io/assets/publications/Schimmelmann_etal_2018.pdf}{(pdf)}}
}

@article{Shoemaker_etal_2017,
  author = {Shoemaker WR and Locey KJ and Lennon JT},
  title = {A macroecological theory of microbial biodiversity},
  journal = {Nature Ecology and Evolution},
  year = {2017},
  volume = {1},
  pages = {0107},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2017.pdf}{(pdf)}}
}

@article{Kuo_etal_2017,
  author = {Kuo V and Shoemaker WR and Muscarella ME and Lennon JT},
  title = {Whole genome sequence of the soil bacterium Micrococcus sp. KBS0714},
  journal = {Genome Announcements},
  year = {2017},
  volume = {5},
  pages = {e00697-17},
  note = {\href{https://lennonlab.github.io/assets/publications/Kuo_etal_2017.pdf}{(pdf)}}
}

@article{NguyenThuy_etal_2017,
  author = {Nguyễn-Thuỳ D and Schimmelmann A and Nguyễn-Văn H and Drobniak A and Lennon JT and Tạ PH and Nguyễn NTA},
  title = {Subterranean microbial oxidation of atmospheric methane in cavernous tropical karst},
  journal = {Chemical Geology},
  year = {2017},
  volume = {466},
  pages = {229--238},
  note = {\href{https://lennonlab.github.io/assets/publications/Nguyen-Thuy_etal_2017.pdf}{(pdf)}}
}

@article{Lau_etal_2017,
  author = {Lau JA and Lennon JT and Heath KD},
  title = {Trees harness the power of microbes to survive climate change},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2017},
  volume = {114},
  pages = {11009--11011},
  note = {\href{https://lennonlab.github.io/assets/publications/Lau_etal_2017.pdf}{(Commentary)}}
}

@article{Lamit_etal_2017,
  author = {Lamit LJ and Romanowicz JH and Potvin LR and Rivers A and Singh K and Lennon JT and Tringe S and Kane E and Lilleskov E},
  title = {Patterns and drivers of fungal community depth stratification in Sphagnum peat},
  journal = {FEMS Microbiology Ecology},
  year = {2017},
  volume = {93},
  pages = {fix082},
  note = {\href{https://lennonlab.github.io/assets/publications/Lamit_etal_2017.pdf}{(pdf)}}
}

@article{Locey_etal_2017,
  author = {Locey KJ and Fisk MC and Lennon JT},
  title = {Microscale insight into microbial seed banks},
  journal = {Frontiers in Microbiology},
  year = {2017},
  volume = {7},
  pages = {2040},
  note = {\href{https://lennonlab.github.io/assets/publications/Locey_etal_2017.pdf}{(pdf)}}
}

@article{Webster_etal_2017,
  author = {Webster KD and Lagarde LR and Sauer PE and Schimmelmann A and Lennon JT and Boston PJ},
  title = {Isotopic evidence for the migration of thermogenic methane in Cueva de Villa Luz cave, Tabasco, Mexico},
  journal = {Journal of Cave and Karst Studies},
  year = {2017},
  volume = {79},
  pages = {24--34},
  note = {\href{https://lennonlab.github.io/assets/publications/Webster_etal_2017.pdf}{(pdf)}}
}

@article{Lennon_Locey_2017,
  author = {Lennon JT and Locey KJ},
  title = {Macroecology for microbiology},
  journal = {Environmental Microbiology Reports},
  year = {2017},
  volume = {9},
  pages = {38--40},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Locey_2017.pdf}{(pdf)}}
}

@article{LaSarre_etal_2017,
  author = {LaSarre B and McCully AL and Lennon JT and McKinlay JB},
  title = {Microbial mutualism dynamics governed by dose-dependent toxicity and growth-independent production of a cross-fed nutrient},
  journal = {ISMEJ},
  year = {2017},
  volume = {11},
  pages = {337--348},
  note = {\href{https://lennonlab.github.io/assets/publications/LaSarre_etal_2017.pdf}{(pdf)}}
}

@article{Lennon_etal_2017b,
  author = {Lennon JT and Nguyễn Thùy D and Phạm Ðức N and Drobniak A and Tạ PH and Phạm NÐ and Streil T and Webster KD and Schimmelmann A},
  title = {Microbial contributions to subterranean methane sinks},
  journal = {Geobiology},
  year = {2017},
  volume = {15},
  pages = {254--258},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2017.pdf}{(pdf)}}
}

@article{Skelton_etal_2017,
  author = {Skelton J and Geyer KM and Lennon JT and Creed RP and Brown BL},
  title = {Multi-scale ecological filters shape crayfish microbiome assembly},
  journal = {Symbiosis},
  year = {2017},
  volume = {72},
  pages = {159--170},
  note = {\href{https://lennonlab.github.io/assets/publications/Skelton_etal_2017.pdf}{(pdf)}}
}

@article{MogerReischer_Lennon_2017,
  author = {Moger-Reischer RZ and Lennon JT},
  title = {Book Review. The human superorganism: how the microbiome is revolutionizing the pursuit of a healthy life by Rodney Dietert},
  journal = {Quarterly Review of Biology},
  year = {2017},
  volume = {92},
  pages = {203},
  note = {\href{https://lennonlab.github.io/assets/publications/Moger-Reicher_Lennon_2017.pdf}{(pdf)}}
}

@article{Locey_Lennon_2017,
  author = {Locey KJ and Lennon JT},
  title = {A modeling platform for the simultaneous emergence of ecological patterns},
  journal = {PeerJ Preprints},
  year = {2017},
  volume = {5},
  pages = {e1469v3},
  note = {\href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2017.pdf}{(pdf)}}
}

@article{Locey_Lennon_2016,
  author = {Locey KJ and Lennon JT},
  title = {Powerful predictions of biodiversity from ecological models and scaling laws},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2016},
  volume = {113},
  pages = {E5097},
  note = {\href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2016_Reply.pdf}{(Reply)}}
}

@article{Lennon_Locey_2016,
  author = {Lennon JT and Locey KJ},
  title = {The underestimation of global microbial diversity},
  journal = {mBio},
  year = {2016},
  volume = {7},
  pages = {e01298-16},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Locey_2016_mBio.pdf}{(pdf)}}
}

@article{Locey_Lennon_2016_PNAS,
  author = {Locey KJ and Lennon JT},
  title = {Scaling laws predict global microbial diversity},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2016},
  volume = {113},
  pages = {5970--5975},
  note = {\href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2016.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Locey_Lennon_2016_SI.pdf}{(Supplementary Information)}, \href{https://lennonlab.github.io/assets/publications/Pedros-Alio_Manrubia_2016.pdf}{(PNAS Commentary)}, \href{https://f1000.com/prime/726327633}{(F1000 Recommendation)}}
}

@article{Lennon_Lehmkuhl_2016,
  author = {Lennon JT and Lehmkuhl BK},
  title = {A trait-based approach to biofilms in soil},
  journal = {Environmental Microbiology},
  year = {2016},
  volume = {18},
  pages = {2732--2742},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Lehmkuhl_2016.pdf}{(pdf)}}
}

@article{Muscarella_etal_2016,
  author = {Muscarella ME and Jones SE and Lennon JT},
  title = {Species sorting along a subsidy gradient alters community stability},
  journal = {Ecology},
  year = {2016},
  volume = {97},
  pages = {2034--2043},
  note = {\href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2016.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Muscarella_etal_Supplement_2016.pdf}{(Supplementary Information)}}
}

@article{Aanderud_etal_2016,
  author = {Aanderud ZT and Vert JC and Magnusson TW and Lennon JT and Breakwell DP and Harker AR},
  title = {Bacterial dormancy is more prevalent in freshwater than hypersaline lakes},
  journal = {Frontiers in Microbiology},
  year = {2016},
  volume = {7},
  pages = {853},
  note = {\href{https://lennonlab.github.io/assets/publications/Aanderud_etal_2016.pdf}{(pdf)}}
}

@incollection{Lennon_Denef_2016,
  author = {Lennon JT and Denef VJ},
  title = {Evolutionary ecology of microorganisms: from the tamed to the wild},
  booktitle = {Manual of Environmental Microbiology, 4th ed.},
  editor = {Yates MV and Nakatsu C and Miller R and Pillai S},
  publisher = {ASM Press},
  address = {Washington, DC},
  year = {2016},
  pages = {4.1.2-1--4.1.2-12},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Denef_2015.pdf}{(pdf)}}
}

@article{Wigington_etal_2016,
  author = {Wigington CH and Sonderegger DL and Brussard CPD and Buchan A and Finke JF and Fuhrman JA and Lennon JT and Middelboe M and Stock CA and Suttle CA and Wilson WH and Wommack EK and Wilhelm SW and Weitz JS},
  title = {Re-examining the relationship between virus and microbial cell abundances in the global oceans},
  journal = {Nature Microbiology},
  year = {2016},
  volume = {1},
  pages = {15024},
  note = {\href{https://lennonlab.github.io/assets/publications/Wiggington_etal_2016.pdf}{(pdf)}, \href{http://weitzgroup.github.io/}{(Interactive Dashboard)}}
}

@article{Hall_etal_2016,
  author = {Hall EK and Schoolmaster DR and Amado AM and Stets EG and Lennon JT and Domine L and Cotner JB},
  title = {Scaling relationships among drivers of aquatic respiration: from the smallest to the largest freshwater ecosystems},
  journal = {Inland Waters},
  year = {2016},
  volume = {6},
  pages = {1--10},
  note = {\href{https://lennonlab.github.io/assets/publications/Hall_etal_2016.pdf}{(pdf)}}
}

@article{KinsmanCostello_etal_2016,
  author = {Kinsman-Costello LE and Hamilton SK and O'Brien J and Lennon JT},
  title = {Phosphorus release from the drying and reflooding of diverse wetland sediments},
  journal = {Biogeochemistry},
  year = {2016},
  volume = {130},
  pages = {159--176},
  note = {\href{https://lennonlab.github.io/assets/publications/Kinsman-Costello_etal_2016.pdf}{(pdf)}}
}

@article{Wisnoski_Lennon_2016,
  author = {Wisnoski NI and Lennon JT},
  title = {Book Review. Principles of Microbial Diversity by James W. Brown},
  journal = {Quarterly Review of Biology},
  year = {2016},
  volume = {91},
  pages = {98--99},
  note = {\href{https://lennonlab.github.io/assets/publications/Wisnoski_Lennon_2016.pdf}{(pdf)}}
}

@article{Martiny_etal_2015,
  author = {Martiny JBH and Jones SE and Lennon JT and Martiny AC},
  title = {Microbiomes in light of traits: a phylogenetic perspective},
  journal = {Science},
  year = {2015},
  volume = {350},
  pages = {aac9323},
  note = {\href{https://lennonlab.github.io/assets/publications/Martiny_etal_2015.pdf}{(pdf)}}
}

@article{Bier_etal_2015,
  author = {Bier RL and Bernhardt ES and Boot CM and Graham EB and Hall EK and Lennon JT and Nemergut D and Osborne BB and Ruiz-Gonzalez C and Schimel JP and Waldrop MP and Wallenstein MD},
  title = {Linking microbial community structure and microbial processes: an empirical and conceptual overview},
  journal = {FEMS Microbiology Ecology},
  year = {2015},
  volume = {91},
  pages = {fiv113},
  note = {\href{https://lennonlab.github.io/assets/publications/Bier_etal_2015.pdf}{(pdf)}}
}

@article{Shoemaker_etal_2015,
  author = {Shoemaker WR and Muscarella ME and Lennon JT},
  title = {Genome sequence of the soil bacterium Janthinobacterium sp. KBS0711},
  journal = {Genome Announcements},
  year = {2015},
  volume = {3},
  pages = {e00689-15},
  note = {\href{https://lennonlab.github.io/assets/publications/Shoemaker_etal_2015.pdf}{(pdf)}}
}

@article{Treseder_Lennon_2015,
  author = {Treseder KK and Lennon JT},
  title = {Fungal traits that drive ecosystem dynamics},
  journal = {Microbiology and Molecular Biology Reviews},
  year = {2015},
  volume = {79},
  pages = {243--262},
  note = {\href{https://lennonlab.github.io/assets/publications/Treseder_Lennon_2015.pdf}{(pdf)}}
}

@article{Solomon_etal_2015,
  author = {Solomon CT and Jones SE and Weidel BC and Buffam I and Fork ML and Karlsson J and Larsen S and Lennon JT and Read JS and Sadro S and Saros JE},
  title = {Ecosystem consequences of changing inputs of terrestrial dissolved organic matter to lakes: current knowledge and future challenges},
  journal = {Ecosystems},
  year = {2015},
  volume = {18},
  pages = {376--389},
  note = {\href{https://lennonlab.github.io/assets/publications/Solomon_etal_2015.pdf}{(pdf)}}
}

@article{Weitz_etal_2015,
  author = {Weitz JS and Stock CA and Wilhelm SW and Bourouiba L and Buchan A and Coleman ML and Follows MJ and Fuhrman JA and Jover LF and Lennon JT and Middelboe M and Sonderegger DL and Suttle CA and Taylor BP and Thingstad TF and Wilson WH and Wommack EK},
  title = {A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes},
  journal = {The ISME Journal},
  year = {2015},
  volume = {9},
  pages = {1352--1364},
  note = {\href{https://lennonlab.github.io/assets/publications/Weitz_etal_2015.pdf}{(pdf)}}
}

@article{Aanderud_etal_2015,
  author = {Aanderud ZT and Jones SE and Fierer N and Lennon JT},
  title = {Resuscitation of the rare biosphere contributes to pulses of ecosystem activity},
  journal = {Frontiers in Microbiology},
  year = {2015},
  volume = {6},
  pages = {24},
  note = {\href{https://lennonlab.github.io/assets/publications/Aanderud_etal_2015.pdf}{(pdf)}}
}

@article{Jones_Lennon_2015,
  author = {Jones SE and Lennon JT},
  title = {A test of the subsidy-stability hypothesis: effects of terrestrial carbon in aquatic ecosystems},
  journal = {Ecology},
  year = {2015},
  volume = {96},
  pages = {1550--1560},
  note = {\href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2015.pdf}{(pdf)}, \href{https://esapubs.org/archive/ecol/E096/138/}{(Supplementary Information)}, \href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2016_ESABulletin.pdf}{(ESA Bulletin Photo Gallery)}}
}

@article{Rocca_etal_2015,
  author = {Rocca JD and Hall EK and Lennon JT and Evans SE and Waldrop MP and Cotner JB and Nemergut DR and Graham EB and Wallenstein MD},
  title = {Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed},
  journal = {The ISME Journal},
  year = {2015},
  volume = {9},
  pages = {1693--1699},
  note = {\href{https://lennonlab.github.io/assets/publications/Rocca_etal_2015.pdf}{(pdf)}}
}

@article{Muscarella_etal_2014,
  author = {Muscarella ME and Bird KC and Larsen ML and Placella SA and Lennon JT},
  title = {Phosphorus resource heterogeneity in microbial food webs},
  journal = {Aquatic Microbial Ecology},
  year = {2014},
  volume = {73},
  pages = {259--272},
  note = {\href{https://lennonlab.github.io/assets/publications/Muscarella_etal_2014.pdf}{(pdf)}}
}

@article{Peralta_etal_2014,
  author = {Peralta AL and Stuart D and Kent AD and Lennon JT},
  title = {A social-ecological framework for "micromanaging" microbial services},
  journal = {Frontiers in Ecology and the Environment},
  year = {2014},
  volume = {12},
  pages = {524--531},
  note = {\href{https://lennonlab.github.io/assets/publications/Peralta_etal_2014.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Peralta_etal_2014_Suppl.pdf}{(Supplementary Information)}, \href{https://lennonlab.github.io/assets/publications/Peralta_etal_2014_Cover.pdf}{(Cover of Issue)}}
}

@article{Krause_etal_2014,
  author = {Krause S and Le Roux X and Niklaus PA and Van Bodegom P and Lennon JT and Bertilsson S and Grossart HP and Philippot L and Bodelier P},
  title = {Trait-based approaches for understanding microbial biodiversity and ecosystem functioning},
  journal = {Frontiers in Microbiology},
  year = {2014},
  volume = {5},
  pages = {251},
  note = {\href{https://lennonlab.github.io/assets/publications/Krause_etal_2014.pdf}{(pdf)}}
}

@article{terHorst_etal_2014,
  author = {terHorst CP and Lennon JT and Lau JA},
  title = {The relative importance of rapid evolution for plant-soil feedbacks depend on ecological context},
  journal = {Proceedings of the Royal Society B},
  year = {2014},
  volume = {281},
  pages = {20140028},
  note = {\href{https://lennonlab.github.io/assets/publications/terHorst_etal_2014.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/terHorst_etal_2014_correction.pdf}{(Correction)}}
}

@article{Dzialowski_etal_2014,
  author = {Dzialowski AR and Rzepecki M and Kostrzewska-Szlakowska I and Lennon JT and Kalinowska K and Palash A},
  title = {Are the abiotic and biotic characteristics of aquatic mesocosms representative of in situ conditions?},
  journal = {Journal of Limnology},
  year = {2014},
  volume = {73},
  pages = {603--612},
  note = {\href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2014.pdf}{(pdf)}}
}

@article{Bertilsson_etal_2013,
  author = {Bertilsson S and Burgin A and Carey CC and Fey SB and Grossart HP and Grubisic L and Jones I and Kirillin G and Lennon JT and Shade A and Smyth RL},
  title = {The under-ice microbiome of seasonally frozen lakes},
  journal = {Limnology and Oceanography},
  year = {2013},
  volume = {58},
  pages = {1998--2012},
  note = {\href{https://lennonlab.github.io/assets/publications/Bertilsson_etal_2013.pdf}{(pdf)}}
}

@article{Lennon_etal_2013,
  author = {Lennon JT and Hamilton SK and Muscarella ME and Grandy AS and Wickings K and Jones SE},
  title = {A source of terrestrial organic carbon to investigate the browning of aquatic ecosystems},
  journal = {PLOS ONE},
  year = {2013},
  volume = {8},
  pages = {e75771},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2013.pdf}{(pdf)}}
}

@article{Ponsero_etal_2013,
  author = {Ponsero AJ and Chen F and Lennon JT and Wilhelm SW},
  title = {Complete genome sequence of a non-lysogenizing cyanobacterial siphoviridae},
  journal = {Genome Announcements},
  year = {2013},
  volume = {1},
  number = {4},
  pages = {e00472-13},
  note = {\href{https://lennonlab.github.io/assets/publications/Ponsero_etal_2013.pdf}{(pdf)}}
}

@article{Lauber_etal_2013,
  author = {Lauber CL and Ramirez KS and Aanderud ZT and Lennon JT and Fierer N},
  title = {Temporal variability in soil microbial communities across land-use types},
  journal = {The ISME Journal},
  year = {2013},
  volume = {7},
  pages = {1641--1650},
  note = {\href{https://lennonlab.github.io/assets/publications/Lauber_etal_2013.pdf}{(pdf)}}
}

@article{Aanderud_etal_2013,
  author = {Aanderud ZT and Jones SE and Schoolmaster DR and Fierer N and Lennon JT},
  title = {Sensitivity of soil respiration and microbial communities to altered snowfall},
  journal = {Soil Biology and Biochemistry},
  year = {2013},
  volume = {57},
  pages = {217--227},
  note = {\href{https://lennonlab.github.io/assets/publications/Aanderud_etal_2013.pdf}{(pdf)}}
}

@article{Shade_etal_2012,
  author = {Shade A and Peter H and Allison S and Baho D and Berga M and Burgmann H and Huber D and Langenheder S and Lennon JT and Martiny JBH and Matulich K and Schmidt TM and Handelsman J},
  title = {Fundamentals of microbial community resistance and resilience},
  journal = {Frontiers in Microbiology},
  year = {2012},
  volume = {3},
  pages = {417},
  note = {\href{https://lennonlab.github.io/assets/publications/Shade_etal_2012.pdf}{(pdf)}}
}

@article{Lau_Lennon_2012,
  author = {Lau JA and Lennon JT},
  title = {Rapid responses of soil microorganisms improve plant fitness in novel environments},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2012},
  volume = {109},
  pages = {14058--14062},
  note = {\href{https://lennonlab.github.io/assets/publications/Lau_Lennon_2012.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Lau_Lennon_2012_Suppl.pdf}{(Supplementary Information)}, \href{https://www.sciencedaily.com/releases/2012/08/120814110957.htm}{(press release)}, \href{http://www.bacteriofiles.com/2012/09/bacteriofiles-micro-edition-103.html}{(pod cast)}, \href{https://f1000.com/prime/717978110}{(F1000 Recommendation)}, \href{https://www.pnas.org/doi/10.1073/pnas.2118690118}{(Correction)}}
}

@article{Lennon_etal_2012,
  author = {Lennon JT and Aanderud ZA and Lehmkuhl BK and Schoolmaster DR},
  title = {Mapping the niche space of soil microorganisms using taxonomy and traits},
  journal = {Ecology},
  year = {2012},
  volume = {93},
  pages = {1867--1879},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2012.pdf}{(pdf)}, \href{https://esapubs.org/archive/ecol/E093/165/}{(Supplementary Information)}, \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2012_ESABull.pdf}{(ESA Bulletin Photo Gallery)}}
}

@article{Burgin_etal_2012,
  author = {Burgin AJ and Hamilton SK and Jones SE and Lennon JT},
  title = {Denitrification by sulfur-oxidizing bacteria in a eutrophic lake},
  journal = {Aquatic Microbial Ecology},
  year = {2012},
  volume = {66},
  pages = {283--293},
  note = {\href{https://lennonlab.github.io/assets/publications/Burgin_etal_2012.pdf}{(pdf)}}
}

@article{OBrien_etal_2012,
  author = {O'Brien JM and Hamilton SK and Kinsman-Costello LE and Lennon JT and Ostrom NE},
  title = {Nitrogen transformations in a through-flow wetland revealed using whole-ecosystem pulsed 15N additions},
  journal = {Limnology and Oceanography},
  year = {2012},
  volume = {57},
  pages = {221--234},
  note = {\href{https://lennonlab.github.io/assets/publications/OBrien_etal_2012.pdf}{(pdf)}}
}

@article{Treseder_etal_2012,
  author = {Treseder KK and Balser TC and Bradford MA and Brodie EL and Eviner VT and Hofmockel KS and Lennon JT and Levine UY and MacGregor BJ and Pett-Ridge J and Waldrop MP},
  title = {Integrating microbial ecology into ecosystem models},
  journal = {Biogeochemistry},
  year = {2012},
  volume = {109},
  pages = {7--18},
  note = {\href{https://lennonlab.github.io/assets/publications/Treseder_etal_2012.pdf}{(pdf)}}
}

@article{Lau_Lennon_2011,
  author = {Lau JA and Lennon JT},
  title = {Evolutionary ecology of plant-microbe interactions: soil microbial structure alters natural selection on plant traits},
  journal = {New Phytologist},
  year = {2011},
  volume = {192},
  pages = {215--224},
  note = {\href{https://lennonlab.github.io/assets/publications/Lau_Lennon_2011.pdf}{(pdf)}}
}

@article{Aanderud_Lennon_2011,
  author = {Aanderud ZT and Lennon JT},
  title = {Validation of heavy-water stable isotope probing for the characterization of rapidly responding soil bacteria},
  journal = {Applied and Environmental Microbiology},
  year = {2011},
  volume = {77},
  pages = {4589--4596},
  note = {\href{https://lennonlab.github.io/assets/publications/Aanderud_Lennon_2011.pdf}{(pdf)}}
}

@article{Fierer_Lennon_2011,
  author = {Fierer N and Lennon JT},
  title = {The generation and maintenance of diversity in microbial communities},
  journal = {American Journal of Botany},
  year = {2011},
  volume = {98},
  pages = {439--448},
  note = {\href{https://lennonlab.github.io/assets/publications/Fierer_Lennon_2011.pdf}{(pdf)}}
}

@article{Jones_Lennon_2010,
  author = {Jones SE and Lennon JT},
  title = {Dormancy contributes to the maintenance of microbial diversity},
  journal = {Proceedings of the National Academy of Sciences of the United States of America},
  year = {2010},
  volume = {107},
  pages = {5881--5886},
  note = {\href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2010.pdf}{(pdf)}}
}

@article{Thum_Lennon_2010,
  author = {Thum RA and Lennon JT},
  title = {Comparative ecological niche models predictive the invasive spread of variable-leaf milfoil (Myriophyllum heterophyllum) and its potential impact on closely related native species},
  journal = {Biological Invasions},
  year = {2010},
  volume = {12},
  pages = {133--143},
  note = {\href{https://lennonlab.github.io/assets/publications/Thum_Lennon_2010.pdf}{(pdf)}}
}

@article{Jones_Lennon_2009,
  author = {Jones SE and Lennon JT},
  title = {Evidence for limited microbial transfer of methane in a planktonic food web},
  journal = {Aquatic Microbial Ecology},
  year = {2009},
  volume = {58},
  pages = {45--53},
  note = {\href{https://lennonlab.github.io/assets/publications/Jones_Lennon_2009.pdf}{(pdf)}}
}

@article{Lennon_Martiny_2008,
  author = {Lennon JT and Martiny JBH},
  title = {Rapid evolution buffers ecosystem impacts of viruses in a microbial food web},
  journal = {Ecology Letters},
  year = {2008},
  volume = {11},
  pages = {1177--1188},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Martiny_2008.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Lennon_Martiny_2008_Suppl.pdf}{(Supplementary Information)}}
}

@article{Lennon_Cottingham_2008,
  author = {Lennon JT and Cottingham KL},
  title = {Microbial productivity in variable resource environments},
  journal = {Ecology},
  year = {2008},
  volume = {84},
  pages = {1001--1014},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Cottingham_2008.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Lennon_Cottingham_2008_Suppl.pdf}{(Supplementary Information)}, \href{https://lennonlab.github.io/assets/publications/Lennon_Cottingham_2008_ESABull.pdf}{(ESA Bulletin Photo Gallery)}}
}

@article{Lennon_etal_2007,
  author = {Lennon JT and Khatana SAM and Marston MF and Martiny JBH},
  title = {Is there a cost of virus resistance in marine cyanobacteria?},
  journal = {The ISME Journal},
  year = {2007},
  volume = {1},
  pages = {300--312},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2007.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2007_ISMECov.jpg}{(Featured Article)}}
}

@article{Lennon_2007,
  author = {Lennon JT},
  title = {Diversity and metabolism of marine bacteria cultivated on dissolved DNA},
  journal = {Applied and Environmental Microbiology},
  year = {2007},
  volume = {73},
  pages = {2799--2805},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_2007.pdf}{(pdf)}}
}

@article{Reyns_etal_2007,
  author = {Reyns NB and Langenheder S and Lennon J},
  title = {Specialization vs. diversification: a trade-off for young scientists?},
  journal = {Eos},
  year = {2007},
  volume = {88},
  pages = {343},
  note = {\href{https://lennonlab.github.io/assets/publications/Reyns_etal_2007.pdf}{(pdf)}}
}

@article{Dzialowski_etal_2007,
  author = {Dzialowski AD and Lennon JT and Smith VH},
  title = {Food web structure provides biotic resistance against plankton invasion attempts},
  journal = {Biological Invasions},
  year = {2007},
  volume = {9},
  pages = {257--256},
  note = {\href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2007.pdf}{(pdf)}}
}

@article{Lennon_etal_2006,
  author = {Lennon JT and Faiia AM and Feng X and Cottingham KL},
  title = {Relative importance of CO2 recycling and CH4 pathways in lake food webs along a terrestrial carbon gradient},
  journal = {Limnology and Oceanography},
  year = {2006},
  volume = {51},
  pages = {1602--1613},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2006.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Lennon_etal_2006_Suppl.pdf}{(Supplementary Information)}}
}

@article{Thum_Lennon_2006,
  author = {Thum RA and Lennon JT},
  title = {Is hybridization responsible for invasive growth of non-indigenous water-milfoils?},
  journal = {Biological Invasions},
  year = {2006},
  volume = {84},
  pages = {1061--1066},
  note = {\href{https://lennonlab.github.io/assets/publications/Thum_Lennon_2006.pdf}{(pdf)}}
}

@article{Cottingham_etal_2005b,
  author = {Cottingham KL and Lennon JT and Brown BL},
  title = {Regression versus ANOVA},
  journal = {Frontiers in Ecology and the Environment},
  year = {2005},
  volume = {3},
  pages = {358},
  note = {\href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2005b.pdf}{(pdf)}}
}

@article{Cottingham_etal_2005a,
  author = {Cottingham KL and Lennon JT and Brown BL},
  title = {Knowing when to draw the line: designing more informative ecological experiments},
  journal = {Frontiers in Ecology and the Environment},
  year = {2005},
  volume = {3},
  pages = {145--152},
  note = {\href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2005a.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2005a_Suppl.pdf}{(Supplementary Information)}}
}

@article{Lennon_Pfaff_2005,
  author = {Lennon JT and Pfaff LE},
  title = {Source and supply of terrestrial carbon affects aquatic microbial metabolism},
  journal = {Aquatic Microbial Ecology},
  year = {2005},
  volume = {39},
  pages = {107--119},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_Pfaff_2005.pdf}{(pdf)}}
}

@article{Thum_etal_2005,
  author = {Thum RA and Lennon JT and Connor J and Smagula AP},
  title = {A DNA fingerprinting approach for distinguishing native and non-native milfoils},
  journal = {Lake and Reservoir Management},
  year = {2005},
  volume = {21},
  pages = {1--6},
  note = {\href{https://lennonlab.github.io/assets/publications/Thum_etal_2005.pdf}{(pdf)}}
}

@article{Lennon_2004,
  author = {Lennon JT},
  title = {Experimental evidence that terrestrial carbon subsidies increase CO2 flux from lake ecosystems},
  journal = {Oecologia},
  year = {2004},
  volume = {138},
  pages = {584--591},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_2004.pdf}{(pdf)}}
}

@phdthesis{Lennon_2004_thesis,
  author = {Lennon JT},
  title = {The energetic importance of terrestrial carbon in lake ecosystems},
  school = {Dartmouth College},
  year = {2004},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_2004_Thesis.pdf}{(pdf)}}
}

@article{Lennon_etal_2003,
  author = {Lennon JT and Smith VH and Dzialowski AR},
  title = {Invasibility of plankton food webs along a trophic state gradient},
  journal = {Oikos},
  year = {2003},
  volume = {102},
  pages = {191--203},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2003.pdf}{(pdf)}}
}

@article{Dzialowski_etal_2003,
  author = {Dzialowski AR and Lennon JT and O'Brien WJ and Smith VH},
  title = {Predator-induced phenotypic plasticity in the exotic cladoceran Daphnia lumholtzi},
  journal = {Freshwater Biology},
  year = {2003},
  volume = {48},
  pages = {1593--1602},
  note = {\href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2003.pdf}{(pdf)}, \href{https://lennonlab.github.io/assets/publications/Dzialowski_etal_2003_Cover.pdf}{(Cover of Issue)}}
}

@article{Cottingham_etal_2001,
  author = {Cottingham KL and Brown BL and Lennon JT},
  title = {Biodiversity may regulate the temporal variability of ecological systems},
  journal = {Ecology Letters},
  year = {2001},
  volume = {4},
  pages = {72--85},
  note = {\href{https://lennonlab.github.io/assets/publications/Cottingham_etal_2001.pdf}{(pdf)}}
}

@article{Lennon_etal_2001,
  author = {Lennon JT and Smith VH and Williams K},
  title = {Influence of temperature on exotic Daphnia lumholtzi and implications for invasion success},
  journal = {Journal of Plankton Research},
  year = {2001},
  volume = {23},
  pages = {425--434},
  note = {\href{https://lennonlab.github.io/assets/publications/Lennon_etal_2001.pdf}{(pdf)}}
}

@inproceedings{deNoyelles_etal_1999,
  author = {deNoyelles FJ and Wang SH and Meyer JO and Huggins DG and Lennon JT and Kolln WS and Randtke SJ},
  title = {Water quality issues in reservoirs: some considerations from a study of a large reservoir in Kansas},
  booktitle = {Proceedings of the 49th Annual Environmental Engineering Conference, University of Kansas, Lawrence},
  year = {1999},
  note = {\href{https://lennonlab.github.io/assets/publications/deNoyelles_etal_1999.pdf}{(pdf)}}
}

@mastersthesis{Lennon_1999,
  author = {Lennon JT},
  title = {Invasion success of the exotic Daphnia lumholtzi: species traits and community resistance},
  school = {University of Kansas},
  year = {1999},
  note = {}
}