Merge branch 'release/0.12.0-dev.1' into develop

# Conflicts:
#	docs/conf.py
#	environments/py-3.10-linux-64-dev.conda.lock.yml
#	environments/py-3.10-linux-64.conda.lock.yml
#	environments/py-3.10-win-64-dev.conda.lock.yml
#	environments/py-3.10-win-64.conda.lock.yml
#	geoapps/clustering/application.py
#	geoapps/inversion/base_inversion_application.py
#	geoapps/inversion/components/preprocessing.py
#	geoapps/inversion/electricals/application.py
#	geoapps/shared_utils/utils.py
#	geoapps/triangulated_surfaces/application.py
#	geoapps/utils/testing.py
#	py-3.10.conda-lock.yml
#	pyproject.toml
#	tests/utils_test.py

Author: domfournier

README.rst

@@ -161,7 +161,7 @@ The use of Third Party Software is governed by the terms of such software licens
 Third Party Software notices and/or additional terms and conditions are located in the
 `THIRD_PARTY_SOFTWARE.rst`_ file.
 
-.. _THIRD_PARTY_SOFTWARE.rst: THIRD_PARTY_SOFTWARE.rst
+.. _THIRD_PARTY_SOFTWARE.rst: docs/THIRD_PARTY_SOFTWARE.rst
 
 License
 ^^^^^^^

THIRD_PARTY_SOFTWARE.rst

@@ -0,0 +1,3 @@
+include_dev: True
+py_versions:
+  - "3.10"

deps-lock-config.yaml

@@ -0,0 +1,88 @@
+Third Party Software
+====================
+
+The geoapps repository and source distributions bundle several libraries that are
+compatibly licensed.  We list these here.
+
+.. list-table::
+   :widths: 30 30 60
+   :header-rows: 1
+
+   * - Name
+     - License
+     - Description
+   * - `Dask <https://github.com/dask/dask/>`_
+     - BSD-3-Clause
+     - Parallel PyData with Task Scheduling
+   * - `dash-daq <https://github.com/plotly/dash-daq>`_
+     - MIT
+     - DAQ components for Dash
+   * - `discretize <https://simpeg.xyz/>`_
+     - MIT
+     - Discretization tools for finite volume and inverse problems
+   * - `Distributed <https://distributed.dask.org/>`_
+     - BSD-3-Clause
+     - Distributed scheduler for Dask
+   * - `Fiona <https://github.com/Toblerity/Fiona>`_
+     - BSD 3-Clause
+     - Fiona reads and writes spatial data files
+   * - `fsspec <https://github.com/fsspec/filesystem_spec>`_
+     - BSD-3-Clause
+     - File-system specification
+   * - `GDAL <https://github.com/OSGeo/gdal>`_
+     - MIT
+     - GDAL: Geospatial Data Abstraction Library
+   * - `geoh5py <https://github.com/MiraGeoscience/geoh5py>`_
+     - LGPL-3.0-or-later
+     - Python API for geoh5, an open file format for geoscientific data
+   * - `ipyfilechooser <https://github.com/crahan/ipyfilechooser>`_
+     - MIT
+     - Python file chooser widget for use in Jupyter/IPython in conjunction with ipywidgets
+   * - `ipywidgets <https://github.com/jupyter-widgets/ipywidgets>`_
+     - BSD 3-Clause
+     - Jupyter interactive widgets
+   * - `jupyter-dash <https://github.com/plotly/jupyter-dash>`_
+     - MIT
+     - Dash support for the Jupyter notebook interface
+   * - `libhwloc <https://github.com/conda-forge/libhwloc-feedstock>`_
+     - BSD-3-Clause
+     - Portable Hardware Locality (hwloc)
+   * - `matplotlib <https://github.com/matplotlib/matplotlib>`_
+     - LicenseRef-PSF-based
+     - Python plotting package
+   * - `numpy <https://github.com/numpy/numpy>`_
+     - BSD-3-Clause
+     - Fundamental package for array computing in Python
+   * - `omf <https://github.com/gmggroup/omf>`_
+     - MIT
+     - API Library for Open Mining Format
+   * - `pandas <https://github.com/pandas-dev/pandas>`_
+     - BSD-3-Clause
+     - Powerful data structures for data analysis, time series, and statistics
+   * - `param-sweeps <https://github.com/MiraGeoscience/param-sweeps>`_
+     - MIT
+     - Parameter sweeper for ui.json powered applications
+   * - `plotly <https://github.com/plotly/plotly.py>`_
+     - MIT
+     - An open-source, interactive data visualization library for Python
+   * - `pydiso <https://github.com/simpeg/pydiso>`_
+     - MIT
+     - Wrapper for intel's pardiso implementation in the MKL
+   * - `pymatsolver <https://github.com/simpeg/pymatsolver>`_
+     - MIT
+     - Matrix Solvers for Python
+   * - `scikit-image <https://github.com/scikit-image/scikit-image>`_
+     - BSD-3-Clause
+     - Image processing in Python
+   * - `scikit-learn <https://github.com/scikit-learn/scikit-learn>`_
+     - BSD-3-Clause
+     - A set of python modules for machine learning and data mining
+   * - `scipy <https://github.com/scipy/scipy>`_
+     - BSD-3-Clause
+     - Fundamental algorithms for scientific computing in Python
+   * - `simpeg <http://simpeg.xyz/>`_
+     - MIT
+     - SimPEG: Simulation and Parameter Estimation in Geophysics
+   * - `tqdm <https://github.com/tqdm>`_
+     - MPL-2.0 or MIT
+     - A Fast, Extensible Progress Bar for Python and CLI

docs/THIRD_PARTY_SOFTWARE.rst

@@ -17,6 +17,7 @@
 import shutil
 import plotly.io as pio
 from datetime import datetime
+from importlib.metadata import version
 from packaging.version import Version
 
 pio.renderers.default = "sphinx_gallery"
@@ -100,8 +101,8 @@
 author = "Mira Geoscience Ltd."
 
 # The full version, including alpha/beta/rc tags.
-release = "0.13.0-alpha.1"
-# The shorter X.Y.Z version.
+release = version("geoapps")
+# The short X.Y.Z version.
 version = Version(release).base_version
 
 # List of patterns, relative to source directory, that match files and
@@ -406,7 +407,6 @@
 def get_copyright_notice():
     return f"Copyright {datetime.now().strftime(project_copyright)}"
 
-
 rst_epilog = f"""
 .. |copyright_notice| replace:: {get_copyright_notice()}.
-"""
+"""

docs/conf.py

@@ -1,8 +1,8 @@
-geoapps: Python applications for geoscientific problems
+Geoapps: Python applications for geoscientific problems
 =======================================================
 
 
-Welcome to **geoapps**! Where geoscientists meet to share open-source applications.
+Welcome to **Geoapps**! Where geoscientists meet to share open-source applications.
 
 In short
 ^^^^^^^^
@@ -30,6 +30,7 @@ Contents:
    content/howto.rst
    content/release_notes.rst
    content/feedback.rst
+   THIRD_PARTY_SOFTWARE
 
 
 License