Minor formatting updates

Author: jprestop

docs/binary_output.rst

@@ -17,7 +17,7 @@ For cases where large domains are considered and/or full domain output is requir
    #--IO
    ioOutputMode = 1
 
-In this case, rank-wise binary output files. Personalize and use the batch submission script **/scripts/batch_jobs/fasteddy_convert_pbs_script_casper.sh** which will invoke a python script (**/scripts/python_utilities/post-processing/FEbinaryToNetCDF.py**) to convert the rank-wise binary files from each output timestep into a single aggregate netCDF output file per timestep. Users can run the following `conda activate` command if running on Casper:
+In this case, rank-wise binary output files. Personalize and use the batch submission script **/scripts/batch_jobs/fasteddy_convert_pbs_script_casper.sh** which will invoke a python script (**/scripts/python_utilities/post-processing/FEbinaryToNetCDF.py**) to convert the rank-wise binary files from each output timestep into a single aggregate netCDF output file per timestep. Users can run the following :code:`conda activate` command if running on Casper:
 
 .. code::
 
@@ -30,10 +30,11 @@ The **convert.json** file controls the specifics of the conversion as follows:
    :header-rows: 1
    :delim: ;
    :class: binary
-	   
+
 .. note::
 
-  - FastEddy can only restart from a netCDF file, irrespective of the :code:`ioOutputMode` options used.
+  FastEddy can only restart from a netCDF file, irrespective of the :code:`ioOutputMode` options used.
+
 
 Profiles
 ========

docs/csv/efficient_output_full.csv

@@ -1,7 +1,7 @@
 Name; Description
-outpath; Path to the root directory containing the rank-wise binary output files. |br| This is ‘outPath‘ in the *.in file.
-FEoutBase; Base simulation name string used as a prefix for output filenames. |br| This is ‘outFileBase‘ in the *.in file.
-numOutRanks; Total number of GPUs used to run the simulation (integer). |br| This is ‘numProcsX*numProcsY‘ in the *.in file.
+outpath; Path to the root directory containing the rank-wise binary output files. |br| This is ‘outPath‘ in the \*.in file.
+FEoutBase; Base simulation name string used as a prefix for output filenames. |br| This is ‘outFileBase‘ in the \*.in file.
+numOutRanks; Total number of GPUs used to run the simulation (integer). |br| This is ‘numProcsX*numProcsY‘ in the \*.in file.
 fileSetSize; Number of files to be converted to netCDF (integer).
 tstart; Simulation timestep where the file conversion starts (integer).
 tstep; Timestep increment between output files to be converted (integer).

docs/csv/efficient_output_prof.csv

@@ -1,5 +1,5 @@
 Name; Description
-runPath; Path to the root directory containing the binary profile output files. |br| This is ‘towerPath‘ in the *.in file.
+runPath; Path to the root directory containing the binary profile output files. |br| This is ‘towerPath‘ in the \*.in file.
 FEparamsFile; FastEddy params.in file.
 outputFileName; Name of the profile netCDF file.
 startStep; Simulation timestep where the profile conversion starts (integer).