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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Unreleased

v0.4 - 2026-04-10

Added

  • get_tasks_by_name now supports filtering tasks by workflow

v0.3.4 - 2025-11-19

Fixed

  • Add check for container_uuid when called get_tasks_by_name.
  • Fix copy_folder to handle directories better in Arvados and only copy the specified folder instead of the whole collection.

v0.3.3 - 2025-10-28

Fixed

  • Address issue where a newly created task was added to the task list. submit_task was returning a task without a name in Arvados (PR #91)
  • Fix incorrect type hint for Arvados in get_task_by_name (PR #96)
  • Fix get_task_state for Arvados not properly checking container request status (PR #97)

v0.3.2 - 2025-07-12

Fixed

  • ArvadosPlatform::get_tasks_by_name was not properly handling list of tasks provided

v0.3.1 - 2025-06-09

Added

  • get_tasks_by_name can now return all tasks in a project, to assist with caching

Changed

  • Update Arvados Python Client requirement to use >=3.0.0 and <3.2.0

v0.3 - 2025-06-02

Added

  • Added get_costs method
  • Added get_projects method

Changed

  • Update Arvados Python Client to 3.1.1
  • get_task_by_name now checks for equilevant input values
  • Remove SevenBridges Endpoint and make that a parameter to connect()
  • Update get_task_input to handle list of files
  • Resolve failing SBG integration test

v0.2.5 - 2025-03-11

Added

  • Added get_files() method along with associated integration tests
  • Added various other method to support project loading/exporting including: add_user_to_project() delete_project_by_name() get_workflows() get_project_users()

Changed

  • Remove support for Python 3.8 and Python 3.13, so only supporting 3.9 - 3.12
  • Rename upload_file_to_project to upload_file

Fixed

  • Fixed get_user method to ignore case sensitivity

v0.2.4 - 2025-02-14

  • Fix get_task_output for optional fields when queried in Arvados

v0.2.3 - 2025-02-12

  • Fix removal of collection.all_files() from Arvados Python SDK.

v0.2.2 - 2025-01-27

  • Downgraded support for arvados-python to 2.7.4

v0.3-rc3 - 2024-12-16

Changed

  • Update support Python version >= 3.9

v0.3-rc2 - 2024-12-16

Changed

  • Update support Python version >= 3.11

v0.3-rc1 - 2024-12-16

Added

  • Add create_project method
  • Add get_user method
  • Various unit tests

Changed

  • Update support Python version to 3.13
  • Update version of arvados-python to 3.0

Fixed

  • Rename parameter executing_settings to execution_settings in submit_task
  • Addressed various pylint issues
  • Handle list outputs in CWL workflows
  • Check Arvados Outputs collection for cwl output prior to accessing

v0.2.1 - 2024-10-21

Fixed

  • Catch SevenBridges exception when creating invalid task

v0.2 - 2024-06-14

Added

  • get_task_outputs method
  • rename_output_files
  • roll_file method

Fixed

  • Fixed bug in how project is retrieved from SevenBridges

v0.1.1 - 2024-04-09

Fixed

  • Fixed how we iterate files in a SevenBridges project