Merge pull request #409 from NOAA-EDAB/pre-production

Sync `pre-production` and `dev`

Author: BBeltz1

.Rbuildignore

@@ -7,3 +7,5 @@
 
 # folders
 workshop
+docs
+pkgdown

.gitignore

@@ -4,6 +4,8 @@ inst/doc
 .RData
 .Ruserdata
 .DS_Store
+ecodata.Rproj
+plot_forage_index.R
 
 # folders
 docs

DESCRIPTION

@@ -17,7 +17,7 @@ Imports:
   tidyr,
   AICcmodavg,
   cowplot,
-  grid,
+  tibble,
   nlme,
   rpart,
   scales,
@@ -29,14 +29,16 @@ Imports:
   lubridate,
   vegan,
   viridis,
+  ggh4x,
   grid,
   gridExtra,
   flextable,
   heatwaveR,
   forcats,
   patchwork,
   ggpubr,
-  arfit
+  arfit,
+  Polychrome
 Suggests:
   knitr,
   rmarkdown,

NAMESPACE

@@ -1,10 +1,12 @@
 # Generated by roxygen2: do not edit by hand
 
+export(create_all_plots)
 export(geom_gls)
 export(geom_lm)
 export(geom_regime)
 export(plot_SAV)
 export(plot_abc_acl)
+export(plot_advection)
 export(plot_aggregate_biomass)
 export(plot_annual_chl_pp)
 export(plot_aquaculture)
@@ -25,10 +27,13 @@ export(plot_chl_pp)
 export(plot_cold_pool)
 export(plot_cold_pool_sf)
 export(plot_comdat)
+export(plot_comdat_profit)
 export(plot_commercial_div)
-export(plot_community_climate_vulnerability)
+export(plot_community_factors)
+export(plot_community_risks)
 export(plot_condition)
 export(plot_demo)
+export(plot_dissolved_oxygen)
 export(plot_energy_density)
 export(plot_engagement)
 export(plot_exp_n)
@@ -88,6 +93,7 @@ export(plot_wind_occupancy)
 export(plot_wind_port)
 export(plot_wind_revenue)
 export(plot_zoo_abundance_anom)
+export(plot_zoo_community)
 export(plot_zoo_diversity)
 export(plot_zoo_regime)
 export(plot_zoo_strat_abun)