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Notebook Execution and Test — Germline, Pangenome, VEP #27

Notebook Execution and Test — Germline, Pangenome, VEP

Notebook Execution and Test — Germline, Pangenome, VEP #27

Manually triggered May 13, 2026 12:56
Status Success
Total duration 3h 25m 42s
Artifacts 3

ci.yml

on: workflow_dispatch
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3 warnings
germline-wes
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v3, actions/setup-python@v4, actions/upload-artifact@v4, dawidd6/action-send-mail@6e71c855c9a091d80a519621b9fd3e8d252ca40c. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
pangenome
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v3, actions/setup-python@v4, actions/upload-artifact@v4, dawidd6/action-send-mail@6e71c855c9a091d80a519621b9fd3e8d252ca40c. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/
variant-effect-prediction
Node.js 20 actions are deprecated. The following actions are running on Node.js 20 and may not work as expected: actions/checkout@v3, actions/setup-python@v4, actions/upload-artifact@v4, dawidd6/action-send-mail@6e71c855c9a091d80a519621b9fd3e8d252ca40c. Actions will be forced to run with Node.js 24 by default starting June 2nd, 2026. Node.js 20 will be removed from the runner on September 16th, 2026. Please check if updated versions of these actions are available that support Node.js 24. To opt into Node.js 24 now, set the FORCE_JAVASCRIPT_ACTIONS_TO_NODE24=true environment variable on the runner or in your workflow file. Once Node.js 24 becomes the default, you can temporarily opt out by setting ACTIONS_ALLOW_USE_UNSECURE_NODE_VERSION=true. For more information see: https://github.blog/changelog/2025-09-19-deprecation-of-node-20-on-github-actions-runners/

Artifacts

Produced during runtime
Name Size Digest
germline notebook and pytest Expired
99 KB
sha256:5400479c39d1d6985e27cc9515cbf2e18547944a1e5d209bc43daccb80be80c1
pangenome notebook and pytest Expired
137 KB
sha256:c091a89463e39c984ee7e4aaa6dd9662bec994877c8a5e169cf85aa00b1057ad
variant effect prediction notebook and pytest Expired
135 KB
sha256:f56796905f000ab6068a6924ada5eeec663fdef03087544f033e35924aa1abb5