PyMICE_SM/article.tex at master · Neuroinflab/PyMICE_SM · GitHub

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\journalname{Behavior Research Methods}

\begin{document}

\title{PyMICE -- a Python library for analysis of IntelliCage data
}

\author{Jakub M. Dzik \and
        Alicja Puścian \and
        Zofia Mijakowska \and
        Kasia Radwanska \and
        Szymon Łęski
}


\institute{J. M. Dzik \and A. Puścian \and S. Łęski \at
              Department of Neurophysiology, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland \\
           \and
           Z. Mijakowska \and K. Radwanska \at
              Department of Molecular and Cellular Neurobiology, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Warsaw, Poland
           \and
           S. Łęski \at \email{s.leski@nencki.gov.pl}
}

\maketitle

\begin{abstract}
\input{pymice_abstract}
\keywords{Python \and library \and mice \and behavior \and analysis \and IntelliCage}
\end{abstract}

\section*{Introduction}
\label{intro}
\input{pymice_introduction}

\section*{IntelliCage system}
\label{sec:1}
\input{pymice_intellicage}

\section*{PyMICE library}
\label{sec:2}
\input{pymice_overview}

\section*{Examples}
\label{sec:3}
\input{pymice_examples}

\subsection*{Example 1: minimal example -- extracting the side of the first nosepokes in six lines of code}
\label{sec:3:1}
\input{example1}

\subsection*{Example 2: full analysis example -- side discrimination task}
\label{sec:3:2}
\input{example2}

\subsection*{Example 3: reproducibility -- batch analysis of data}
\label{sec:3:3}
\input{example3}

\subsection*{Example 4: implementing new behavioral measures -- intervals between visits}
\label{sec:3:4}
\input{example4}


\section*{Technical details}
\label{sec:4}
\input{pymice_technical}

\section*{Terms of use}
\label{sec:5}
\input{pymice_termsofuse}

\section*{Discussion}
\label{sec:6}
\input{pymice_discussion}

\section*{Statement of reproducibility\protect\cite{peng2011}}
\label{sec:7}
\input{pymice_reproducibility}

\begin{acknowledgements}
\input{pymice_acknowledgements}
\end{acknowledgements}

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\end{document}