Merge pull request #3644 from infotroph/drop-R4.1

[build] drop R4.1, add R4.5

Author: infotroph

.github/workflows/ci-weekly.yml

@@ -13,8 +13,8 @@ jobs:
       fail-fast: false
       matrix:
         R:
-          - "4.1"
           - "4.3"
+          - "4.5"
           - "devel"
     uses: ./.github/workflows/test.yml
     with:
@@ -26,8 +26,8 @@ jobs:
       fail-fast: false
       matrix:
         R:
-          - "4.1"
           - "4.3"
+          - "4.5"
           - "devel"
     uses: ./.github/workflows/check.yml
     with:
@@ -40,8 +40,8 @@ jobs:
       fail-fast: false
       matrix:
         R:
-          - "4.1"
           - "4.3"
+          - "4.5"
           - "devel"
     uses: ./.github/workflows/sipnet.yml
     with:

.github/workflows/docker.yml

@@ -20,18 +20,18 @@ on:
         type: choice
         default: "$DEFAULT_R_VERSION"
         options:
-          - 4.1
           - 4.2
           - 4.3
           - 4.4
+          - 4.5
           - devel
   schedule:
     # 1:30 AM UTC, different R version each day
     - cron: '30 1 * * 1' # Rdevel
-    - cron: '30 1 * * 2' # R4.4
+    - cron: '30 1 * * 2' # R4.2
     - cron: '30 1 * * 3' # R4.3
-    - cron: '30 1 * * 4' # R4.2
-    - cron: '30 1 * * 5' # R4.1
+    - cron: '30 1 * * 4' # R4.4
+    - cron: '30 1 * * 5' # R4.5
 
 jobs:
   # ----------------------------------------------------------------------
@@ -49,16 +49,16 @@ jobs:
         run: echo "R_VERSION=devel" >> "$GITHUB_OUTPUT"
       - id: tue
         if: github.event.schedule == '30 1 * * 2'
-        run: echo "R_VERSION=4.4" >> "$GITHUB_OUTPUT"
+        run: echo "R_VERSION=4.2" >> "$GITHUB_OUTPUT"
       - id: wed
         if: github.event.schedule == '30 1 * * 3'
         run: echo "R_VERSION=4.3" >> "$GITHUB_OUTPUT"
       - id: thu
         if: github.event.schedule == '30 1 * * 4'
-        run: echo "R_VERSION=4.2" >> "$GITHUB_OUTPUT"
+        run: echo "R_VERSION=4.4" >> "$GITHUB_OUTPUT"
       - id: fri
         if: github.event.schedule == '30 1 * * 5'
-        run: echo "R_VERSION=4.1" >> "$GITHUB_OUTPUT"
+        run: echo "R_VERSION=4.5" >> "$GITHUB_OUTPUT"
       - id: default
         if: github.event_name != 'schedule'
         run: echo "R_VERSION=${{ github.event.inputs.r_version || env.DEFAULT_R_VERSION }}" >> "$GITHUB_OUTPUT"

CHANGELOG.md

@@ -42,6 +42,7 @@ section for the next release.
 - `extract_soil_gssurgo` now supports spatial sampling using a grid of user-defined size and spacing. And supports ensemble simulation of soil organic carbon (SOC) stocks, using area-weighted aggregation
 - The ERA5 NC extraction function can now handle multi-site instead of one
 - All of the `met2model.*` functions no longer write a list of variables (`*.nc.var`) file alongside each output netcdf. If you need var files, use `PEcAn.utils::nc_write_vars()` after the run completes (#3611, #3616).
+- Stopped testing on R 4.1, started testing on R 4.5, and updated prebuilt Docker images to match -- they are now available for R releases 4.2 through 4.5 as well as for R under development.
 - `write.config.STICS()` now modifies parameters with vectors rather than individually.