- Adding option for lower and upper bounds
- Adding
stepwise_selectionfor automated stepwise model selection - Adding
plotoption to useggraphas alternative to previousigraphoption - Adding
convert_equationsto extendsem::specifyEquationsand simplify specification for large models - Adding argument
prior_negloglikeas interface to specify Bayesian priors and/or likelihood penalties indsem - Adding
dsemRTMBusing RTMB as interchangeable alternative todsemusing TMB
- Adding option to specify constant marginal variance, as alternative to existing calculation which results in a constant conditional variance but a changing marginal variance along the causal graph
- removing
checkDepPackageVersion(dep_pkg="Matrix", this_pkg="TMB")from.onLoad()as requested by K. Kristensen
- Adding option to specify covariance via argument
covs - Adding options to specify gmrf_parameterization="projection"
- Adding vigette outlining how to fit dynamic factor analysis
- Fix bug arising when
tsdatahad two or more columns sharing a single variable name - Adding
make_dfahelper function - Updating bering_sea dataset to include extra year of cold-pool, and changing vignette to match the published specification and results
- Updating the lag indexing for the Klein-I model in the vignette to use positive values for lags, and updating saved MCMC results to match that corrected specification
- Adding option to specify covariance in Gamma
- Eliminate
evalusage - Add codecov Action and badge
- Change default behavior so that all variables in
tsdatahave a standard deviation by default
- Fix bug in
simulate.dsemto keep up with changing interface indsem - Update CITATION to indicate accepted paper
- Remove fit_tmb to eliminate cryptic warning messages and simplify code
- Initial public release