usegalaxy-eu-tools/tools_iuc.yaml.lock at master · ThomasWollmann/usegalaxy-eu-tools · GitHub

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install_repository_dependencies: true
install_resolver_dependencies: true
install_tool_dependencies: false
tools:
- name: bedtools
  owner: iuc
  revisions:
  - 4f7a5ccd2ae9
  - 6bb3cd018203
  - 87ee588b3d45
  - b8348686a0b9
  - db1841942d2b
  - e19bebe96cd2
  tool_panel_section_label: Operate on Genomic Intervals
- name: collection_element_identifiers
  owner: iuc
  revisions:
  - 220ee3518f19
  tool_panel_section_label: Collection Operations
- name: crosscontamination_barcode_filter
  owner: iuc
  revisions:
  - 582b7bd4ae4c
  tool_panel_section_label: RNA Analysis
- name: deg_annotate
  owner: iuc
  revisions:
  - b42373cddb77
  - e98d4ab5b5bc
  tool_panel_section_label: RNA Analysis
- name: raceid_inspectclusters
  owner: iuc
  revisions:
  - '106718959281'
  - 9fec5dd8fbb9
  tool_panel_section_label: RNA Analysis
- name: raceid_filtnormconf
  owner: iuc
  revisions:
  - 56a093c2a3f9
  - 8dc8ff057b0f
  tool_panel_section_label: RNA Analysis
- name: raceid_clustering
  owner: iuc
  revisions:
  - 4ea021bd7513
  - 528a43b1cbcf
  tool_panel_section_label: RNA Analysis
- name: raceid_trajectory
  owner: iuc
  revisions:
  - 87de515af823
  - ff7cd3c7c1df
  tool_panel_section_label: RNA Analysis
- name: raceid_inspecttrajectory
  owner: iuc
  revisions:
  - 5156383d3a5d
  - e0e9b24d76aa
  tool_panel_section_label: RNA Analysis
- name: kallisto_quant
  owner: iuc
  revisions:
  - 10c98fab6c5a
  - 59a4c97b85d6
  - b818b23df1e0
  tool_panel_section_label: RNA Analysis
- name: slamdunk
  owner: iuc
  revisions:
  - 24657d5edede
  - 3fd7458bc861
  tool_panel_section_label: RNA Analysis
- name: plasflow
  owner: iuc
  revisions:
  - bda6012394f7
  tool_panel_section_label: Metagenomic analyses
- name: ruvseq
  owner: iuc
  revisions:
  - 61dffb20b6f9
  tool_panel_section_label: RNA Analysis
- name: kallisto_pseudo
  owner: iuc
  revisions:
  - 1c75aa5de15e
  - 2953303df011
  - 63f76b9f4ba7
  tool_panel_section_label: RNA Analysis
- name: scpipe
  owner: iuc
  revisions:
  - 4ec6717872b1
  - 5c4bca9dd4a2
  tool_panel_section_label: RNA Analysis
- name: seurat
  owner: iuc
  revisions:
  - 8d8412d35247
  tool_panel_section_label: RNA Analysis
- name: feelnc
  owner: iuc
  revisions:
  - 17a77824c8e4
  - b36afbb04e1c
  tool_panel_section_label: RNA Analysis
- name: volcanoplot
  owner: iuc
  revisions:
  - 59ebf2c42c0e
  - 6d532d760950
  - d1d39c72b755
  tool_panel_section_label: Graph/Display Data
- name: nanoplot
  owner: iuc
  revisions:
  - 4c172a4a4c9e
  - db1eeffba23e
  tool_panel_section_label: Graph/Display Data
- name: intervene
  owner: iuc
  revisions:
  - f5fa293605ca
  tool_panel_section_label: Graph/Display Data
- name: charts
  owner: iuc
  revisions:
  - a87a3773d8ed
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_pca
  owner: iuc
  revisions:
  - bb6ec8e5387f
  - c21099566418
  tool_panel_section_label: Graph/Display Data
- name: pygenometracks
  owner: iuc
  revisions:
  - 0ea86f6bf2a1
  - 2074627b0f83
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap
  owner: iuc
  revisions:
  - f44dc95928aa
  - fe8d4655ee10
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_violin
  owner: iuc
  revisions:
  - 3a270cee1239
  - 43778344b955
  - a597d59df9ee
  - d85535076554
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_heatmap2
  owner: iuc
  revisions:
  - 4955e9bb96d1
  - 76380bf74511
  - ca7cb0eaad62
  - cb04f3235a4e
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_point
  owner: iuc
  revisions:
  - 1bff6682e780
  - 46f91106439b
  - 9a482995958c
  - a78aa83f6625
  tool_panel_section_label: Graph/Display Data
- name: ggplot2_histogram
  owner: iuc
  revisions:
  - 63a595b451d1
  - 9d060114554c
  - d3d92fb20389
  - f52035800250
  tool_panel_section_label: Graph/Display Data
- name: tsne
  owner: iuc
  revisions:
  - 53cfe6f313b3
  tool_panel_section_label: Graph/Display Data
- name: idr
  owner: iuc
  revisions:
  - d3ebbf39b1c5
  tool_panel_section_label: RNA Analysis
- name: circos
  owner: iuc
  revisions:
  - ae9994cf526f
  - ef5f8bbf7730
  tool_panel_section_label: Graph/Display Data
- name: ebi_search_rest_results
  owner: iuc
  revisions:
  - 42d5e40fcd0b
  - b6029f2c71cb
  tool_panel_section_label: Get Data
- name: ebi_metagenomics_run_downloader
  owner: iuc
  revisions:
  - a1ef6c88ee37
  - e2e9fae080ad
  tool_panel_section_label: Get Data
- name: column_maker
  owner: devteam
  revisions:
  - 464b9305180e
  - 626658afe4cb
  tool_panel_section_label: Text Manipulation
- name: reshape2_melt
  owner: iuc
  revisions:
  - 317ed0ee8bf2
  tool_panel_section_label: Text Manipulation
- name: reshape2_cast
  owner: iuc
  revisions:
  - d3b66a3a08ca
  tool_panel_section_label: Text Manipulation
- name: sra_tools
  owner: iuc
  revisions:
  - 1790dcf3c32d
  - 26b7446bb17e
  - 5534eb46de20
  - 5e6237d58b0c
  - b723c120161a
  - c38286ea7047
  tool_panel_section_label: Get Data
- name: codeml
  owner: iuc
  revisions:
  - 961a712f9743
  - ba71e26d5bdc
  tool_panel_section_label: Evolution
- name: prinseq
  owner: iuc
  revisions:
  - 02befcb391f5
  - 6b865dde1baa
  tool_panel_section_label: Text Manipulation
- name: add_value
  owner: devteam
  revisions:
  - 745871c0b055
  tool_panel_section_label: Text Manipulation
- name: dwt_var_perfeature
  owner: devteam
  revisions:
  - 7a15159140d1
  - cb1c59d69557
  tool_panel_section_label: Statistics
- name: merge_cols
  owner: devteam
  revisions:
  - f2aac0c5c60d
  tool_panel_section_label: Text Manipulation
- name: jq
  owner: iuc
  revisions:
  - 5ff75eb1a893
  tool_panel_section_label: Text Manipulation
- name: column_maker
  owner: devteam
  revisions:
  - 464b9305180e
  - 626658afe4cb
  tool_panel_section_label: Text Manipulation
- name: coverage
  owner: devteam
  revisions:
  - 1e864693a1c0
  - 4ef9819dc7fb
  - bc9c66c1e9c9
  tool_panel_section_label: Text Manipulation
- name: tables_arithmetic_operations
  owner: devteam
  revisions:
  - 2e9f3b6ebfbc
  - 82fa5062d611
  tool_panel_section_label: Text Manipulation
- name: merge
  owner: devteam
  revisions:
  - 0926c81f382c
  - 381cd27bf67a
  tool_panel_section_label: Text Manipulation
- name: intersect
  owner: devteam
  revisions:
  - 33b3f3688db4
  - 5b3c6135a982
  - 8ddabc73af92
  tool_panel_section_label: Text Manipulation
- name: flanking_features
  owner: devteam
  revisions:
  - 8307665c4b6c
  - a09d13b108fd
  tool_panel_section_label: Text Manipulation
- name: join
  owner: devteam
  revisions:
  - a10f49d9218a
  - e56b47dce68a
  - ffbd1de29c28
  tool_panel_section_label: Text Manipulation
- name: cluster
  owner: devteam
  revisions:
  - 05696474ee89
  - 765ceb06c3e2
  - d5677eecbad4
  tool_panel_section_label: Text Manipulation
- name: get_flanks
  owner: devteam
  revisions:
  - 077f404ae1bb
  - 4cd116158aef
  - a72f0decd7b3
  tool_panel_section_label: Text Manipulation
- name: complement
  owner: devteam
  revisions:
  - 38c8bb402872
  - d958d5a0d1e8
  - e0a23ab32d7f
  tool_panel_section_label: Text Manipulation
- name: subtract
  owner: devteam
  revisions:
  - 0145969324c4
  - 5bc2dacbe729
  - 7a2a604ae9c8
  tool_panel_section_label: Text Manipulation
- name: basecoverage
  owner: devteam
  revisions:
  - 0a3e3133b09d
  - 1e6a9e97fa41
  - 2cedec3759e4
  tool_panel_section_label: Text Manipulation
- name: subtract_query
  owner: devteam
  revisions:
  - 960d5d114184
  - ff3901618482
  tool_panel_section_label: Text Manipulation
- name: dna_filtering
  owner: devteam
  revisions:
  - 549d2cb4c6f2
  tool_panel_section_label: Text Manipulation
- name: collection_column_join
  owner: iuc
  revisions:
  - 071084070619
  - 58228a4d58fe
  - 9c8536c7ed42
  - dfde09461b1e
  tool_panel_section_label: Join, Subtract and Group
- name: suite_datamash
  owner: iuc
  revisions:
  - 2d85df079b20
  - e4af96810404
  - fbe724ced39e
  tool_panel_section_label: Join, Subtract and Group
- name: subtract
  owner: devteam
  revisions:
  - 0145969324c4
  - 5bc2dacbe729
  - 7a2a604ae9c8
  tool_panel_section_label: Join, Subtract and Group
- name: bam_to_scidx
  owner: iuc
  revisions:
  - 11fc60f0e942
  - 408520e1ae1a
  - b737f6d83f48
  tool_panel_section_label: Convert Formats
- name: resize_coordinate_window
  owner: iuc
  revisions:
  - 08b6255afde7
  - 541f300f322d
  - 9ba78e8985dc
  tool_panel_section_label: Convert Formats
- name: gffread
  owner: devteam
  revisions:
  - 0232f19d300f
  - 9f243677c4c6
  tool_panel_section_label: Convert Formats
- name: ucsc_twobittofa
  owner: iuc
  revisions:
  - 356dc923f8d3
  - 4a81db403bd9
  - d025a40bbff1
  tool_panel_section_label: Convert Formats
- name: tabular_to_fasta
  owner: devteam
  revisions:
  - 0b4e36026794
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: filtlong
  owner: iuc
  revisions:
  - 8880fb74ef56
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_to_tabular
  owner: devteam
  revisions:
  - 7e801ab2b70e
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastqtofasta
  owner: devteam
  revisions:
  - 4844c1810c16
  - 723b5b38d88a
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastq_to_fasta
  owner: devteam
  revisions:
  - 02a5f43cd5d1
  - 186b8d913e6c
  - ce309f4ff17f
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fastp
  owner: iuc
  revisions:
  - 3e2551a37201
  - 415fd81b85d3
  - 6c2351178f8d
  - 988729b728f0
  - a935cbdf1c0e
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: fasta_stats
  owner: iuc
  revisions:
  - 9c620a950d3a
  tool_panel_section_label: FASTA/FASTQ manipulation
- name: length_and_gc_content
  owner: iuc
  revisions:
  - 2ca1baabdae0
  - f088370d2a3c
  tool_panel_section_label: Extract Features
- name: extract_genomic_dna
  owner: iuc
  revisions:
  - 8dd8e89c0603
  - c8467246b57e
  - e400dcbc60d0
  tool_panel_section_label: Other Tools
- name: concat
  owner: devteam
  revisions:
  - 35a89f8cc96e
  - d491589307e7
  tool_panel_section_label: Operate on Genomic Intervals
- name: complement
  owner: devteam
  revisions:
  - 38c8bb402872
  - d958d5a0d1e8
  - e0a23ab32d7f
  tool_panel_section_label: Operate on Genomic Intervals
- name: cluster
  owner: devteam
  revisions:
  - 05696474ee89
  - 765ceb06c3e2
  - d5677eecbad4
  tool_panel_section_label: Operate on Genomic Intervals
- name: basecoverage
  owner: devteam
  revisions:
  - 0a3e3133b09d
  - 1e6a9e97fa41
  - 2cedec3759e4
  tool_panel_section_label: Operate on Genomic Intervals
- name: annotation_profiler
  owner: devteam
  revisions:
  - 3b33da018e74
  tool_panel_section_label: Operate on Genomic Intervals
- name: t_test_two_samples
  owner: devteam
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