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Copy pathdatacloud_input.txt
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53 lines (39 loc) · 2.19 KB
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###############################################################################
#
#
# example dvc process control file
#
#
###############################################################################
# all lines beginning with a # character are ignored
# some parameters are conditionally required, depending on the setting of other parameters
# for example, if subvol_thresh is off, the threshold description parameters are not required
### file names
reference_filename reference.npy ### reference tomography image volume
correlate_filename correlate.npy ### correlation tomography image volume
point_cloud_filename grid_input.roi ### file of search point locations
output_filename 42kpoints_out ### base name for output files
### description of the image data files, all must be the same size and structure
vol_bit_depth 8 ### 8 or 16
vol_hdr_lngth 96 ### fixed-length header size, may be zero
vol_wide 20 ### width in pixels of each slice
vol_high 30 ### height in pixels of each slice
vol_tall 40 ### number of slices in the stack
### parameters defining the subvolumes that will be created at each search point
subvol_geom sphere ### cube, sphere
subvol_size 10 ### side length or diameter, in voxels
subvol_npts 8000 ### number of points to distribute within the subvol
subvol_thresh off ### on or off, evaluate subvolumes based on threshold
# gray_thresh_min 27 ### lower limit of a gray threshold range if subvol_thresh is on
# gray_thresh_max 127 ### upper limit of a gray threshold range if subvol_thresh is on
# min_vol_fract 0.2 ### only search if subvol fraction is greater than
### required parameters defining the basic the search process
disp_max 3 ### in voxels, used for range checking and global search limits
num_srch_dof 6 ### 3, 6, or 12
obj_function znssd ### sad, ssd, zssd, nssd, znssd
interp_type tricubic ### trilinear, tricubic
### optional parameters tuning and refining the search process
rigid_trans 3.0 4.0 0.0 ### rigid body offset of target volume, in voxels
basin_radius 0.0 ### coarse-search resolution, in voxels, 0.0 = none
subvol_aspect 1.0 1.0 1.0 ### subvolume aspect ratio
num_points_to_process 10