DESCRIPTION

Package: MSstatsBioNet
Type: Package
Title: Network Analysis for MS-based Proteomics Experiments
Version: 1.3.6
Authors@R: c(
    person("Anthony", "Wu", email = "wu.anthon@northeastern.edu", 
        role = c("aut", "cre"), comment = c(ORCID = "0009-0001-7391-9902")),
    person("Olga", "Vitek", email = "o.vitek@northeastern.edu", 
        role = "aut", comment=c(ORCID = "0000-0003-1728-1104"))) 
Description: A set of tools for network analysis using mass 
    spectrometry-based proteomics data and network databases. The package takes 
    as input the output of MSstats differential abundance analysis and provides 
    functions to perform enrichment analysis and visualization in the 
    context of prior knowledge from past literature. Notably, this package 
    integrates with INDRA, which is a database of biological networks
    extracted from the literature using text mining techniques.
License: file LICENSE
Depends: 
    R (>= 4.4.0), 
    MSstats
Imports: 
    httr,
    jsonlite,
    r2r,
    tidyr,
    htmlwidgets,
    grDevices,
    stats,
    text2vec,
    stopwords,
    xml2,
    rentrez
Suggests: 
    data.table,
    BiocStyle,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    mockery,
    MSstatsConvert,
    shiny
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software, 
    QualityControl, NetworkEnrichment, Network
Encoding: UTF-8
URL: http://msstats.org, https://vitek-lab.github.io/MSstatsBioNet/
BugReports: https://groups.google.com/forum/#!forum/msstats
Config/testthat/edition: 3
RoxygenNote: 7.3.3