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101 lines (100 loc) · 3.07 KB
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# Generated by roxygen2: do not edit by hand
S3method(addPerCellQCMetrics,Seurat)
S3method(addPerCellQCMetrics,SingleCellExperiment)
S3method(clusterGraph,igraph)
S3method(clusterSNNGraph,HDF5Matrix)
S3method(clusterSNNGraph,Seurat)
S3method(clusterSNNGraph,SingleCellExperiment)
S3method(clusterSNNGraph,default)
S3method(diffusionMapRoots,DiffusionMap)
S3method(getTopHVGs,scend_modelGeneVar)
S3method(infercnv,Seurat)
S3method(infercnv,SingleCellExperiment)
S3method(infercnv,dgCMatrix)
S3method(librarySizeFactors,DelayedArray)
S3method(librarySizeFactors,Seurat)
S3method(librarySizeFactors,SummarizedExperiment)
S3method(librarySizeFactors,default)
S3method(logNormCounts,Seurat)
S3method(logNormCounts,SummarizedExperiment)
S3method(logNormCounts,default)
S3method(modelGeneVar,HDF5Matrix)
S3method(modelGeneVar,Seurat)
S3method(modelGeneVar,SingleCellExperiment)
S3method(modelGeneVar,default)
S3method(perCellQCMetrics,HDF5Matrix)
S3method(perCellQCMetrics,Seurat)
S3method(perCellQCMetrics,SingleCellExperiment)
S3method(perCellQCMetrics,default)
S3method(quickCluster,Seurat)
S3method(quickCluster,SingleCellExperiment)
S3method(quickMNN,Seurat)
S3method(quickMNN,SingleCellExperiment)
S3method(runDiffusionMap,Seurat)
S3method(runDiffusionMap,SingleCellExperiment)
S3method(runDiffusionMap,default)
S3method(runMNN,HDF5Matrix)
S3method(runMNN,Seurat)
S3method(runMNN,SingleCellExperiment)
S3method(runMNN,default)
S3method(runPCA,HDF5Matrix)
S3method(runPCA,Seurat)
S3method(runPCA,SingleCellExperiment)
S3method(runPCA,default)
S3method(runTSNE,HDF5Matrix)
S3method(runTSNE,Seurat)
S3method(runTSNE,SingleCellExperiment)
S3method(runTSNE,default)
S3method(runUMAP,HDF5Matrix)
S3method(runUMAP,Seurat)
S3method(runUMAP,SingleCellExperiment)
S3method(runUMAP,default)
S3method(scenic,LoomExperiment)
S3method(scenic,Seurat)
S3method(scenic,SingleCellExperiment)
S3method(scenic,SummarizedExperiment)
S3method(scoreFeatureSet,HDF5Matrix)
S3method(scoreFeatureSet,Seurat)
S3method(scoreFeatureSet,SummarizedExperiment)
S3method(scoreFeatureSet,default)
S3method(scoreMarkers,HDF5Matrix)
S3method(scoreMarkers,Seurat)
S3method(scoreMarkers,SingleCellExperiment)
S3method(scoreMarkers,default)
S3method(subCluster,default)
S3method(subSample,HDF5Matrix)
S3method(subSample,Seurat)
S3method(subSample,SingleCellExperiment)
S3method(subSample,default)
export(addPerCellQCMetrics)
export(clusterGraph)
export(clusterSNNGraph)
export(diffusionMapRoots)
export(getTopHVGs)
export(librarySizeFactors)
export(logNormCounts)
export(modelGeneVar)
export(perCellQCMetrics)
export(quickCluster)
export(quickMNN)
export(readH5AD)
export(runDiffusionMap)
export(runMNN)
export(runPCA)
export(runTSNE)
export(runUMAP)
export(scenic)
export(scoreFeatureSet)
export(scoreMarkers)
export(subCluster)
export(subSample)
importFrom(BiocNeighbors,AnnoyParam)
importFrom(rlang,abort)
importFrom(rlang,caller_arg)
importFrom(rlang,caller_call)
importFrom(rlang,caller_env)
importFrom(rlang,ffi_standalone_check_number_1.0.7)
importFrom(rlang,ffi_standalone_is_bool_1.0.7)
importFrom(rlang,is_missing)
importFrom(rlang,is_string)
importFrom(rlang,is_vector)