SSE-Bio/pyproject.toml at main · ZhaohanM/SSE-Bio · GitHub

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[project]
name = "sse-bio"
version = "0.1.0"
description = "SSE-Bio: Structured self-evolving biomedical multi-hop QA for BioHopR-style reasoning"
readme = "README.md"
requires-python = ">=3.11"
keywords = ["biomedical", "knowledge-graph", "multi-hop", "qa", "llm", "agent", "biohopr"]

dependencies = [
    "aiofiles>=24.1.0",
    "accelerate==1.13.0",
    "datasets==4.8.2",
    "loguru>=0.7.3",
    "openai>=1.97.1",
    "peft==0.18.1",
    "pydantic>=2.11.7",
    "rich>=14.1.0",
    "scipy>=1.13.0",
    "tenacity>=9.1.2",
    "toml>=0.10.2",
    "torch==2.10.0",
    "triton==3.6.0; platform_system == 'Linux'",
    "transformers==4.57.6",
    "trl==0.29.0",
    "typer>=0.16.0",
]

[project.scripts]
sse-bio = "run_sse_bio:app"
sse-bio-proxy-sft = "run_proxy_sft:app"
sse-bio-proxy-grpo = "run_proxy_grpo:app"
sse-bio-eval = "run_biohopr_eval:app"
sse-bio-hle-eval = "run_hle_eval:app"
sse-bio-primekg = "run_primekg:app"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"