How to analyze multiple files with SPAdes

[kali1819]

Can anyone help me to figure out how to analyze multiple fastq files with SPAdes. I have a lot of fastq files in one catalog, with interlaced forward and reverse paired-end reads (--12). Is there any way to run them with SPAdes at once?

[asl]

Sure. This is what manual says (https://ablab.github.io/spades/running.html#input-data):

spades.py --pe1-12 lib1_1.fastq --pe1-12 lib1_2.fastq \
          --pe1-s lib1_unpaired_1.fastq --pe1-s lib1_unpaired_2.fastq \
          -o spades_output

[kali1819]

Thx. Sorry but I still dont understand. How should i specify this command to test ... let say 150 samples (fastq data) on one folder? Please forgive me but I am a little bit confused while I am a newbie with SPAdes.