-
Notifications
You must be signed in to change notification settings - Fork 3
Expand file tree
/
Copy pathauto_env_export.bash
More file actions
49 lines (38 loc) · 1.66 KB
/
Copy pathauto_env_export.bash
File metadata and controls
49 lines (38 loc) · 1.66 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
#!/bin/bash
# Copyright (c) 2025, Amogh S. Joshi
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
# The above copyright notice and this permission notice shall be included in all
# copies or substantial portions of the Software.
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
# SOFTWARE.
# FILENAME: auto_env_export
source /etc/profile.d/modules.sh
module purge
CLUSTER=$(echo $(hostname) | cut -d '.' -f 2)
if [[ $CLUSTER == *"gautschi"* ]]; then
INSTALL_DIR=/home/${USER}
module load conda
else
CLUSTER=$(echo $(hostname) | cut -d '.' -f 1)
INSTALL_DIR=/home/${CLUSTER}/a/${USER}
fi
cd $INSTALL_DIR/rcac-utils
# source $HOME/.bashrc
source ./config_slurm.bash
env_array=$(eval "conda env list | cut -d ' ' -f1")
env_array=${env_array[@]:4}
for e in $env_array; do
conda activate $e
conda env export -n $e>"$INSTALL_DIR/ymls/$e.yml"
conda deactivate
done