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# ---- R and RStudio files -----------------------------------------------
.Rproj.user/
.Rhistory
.RData
.Rdata
.Ruserdata
.Rapp.history
# Output files from R CMD build
/*.tar.gz
# Output files from R CMD check
/*.Rcheck/
# R package temporary files
inst/doc
vignettes/*.html
vignettes/*.pdf
vignettes/*.R
# The devtools zip is downloaded when the package is updating itself. If it's not deleted, there's no reason to commit it to the repository.
devtools.zip
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth
# Temporary files created by R markdown
*.utf8.md
*.knit.md
# Example code in package build process
*-Ex.R
# Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
rsconnect/
# ---- Protected Information -----------------------------------------------
# see cubuspl42's answer in http://stackoverflow.com/questions/2415873/exceptions-in-gitignore
/private-material/*
/data-private/*
/data/private/*
# Dataset Exceptions
!utility/package-dependency-list.csv
# Keep the README files in the private directories.
# They provide documentation, and also force the directories to be created on other machines.
# Depending on how you do it, you might need to add w/ the command line
# eg, `git add -f ./data-private/raw/README.md`
!README.md
!data-private/contents.md
!data-private/raw/README.md
!data-private/derived/README.md
!data/private/contents.md
!data/private/raw/README.md
!data/private/derived/README.md
# ---- Caches -----------------------------------------------
# Exclude caches in case they contain PHI
cache/
# knitr and RMarkdown default cache directories
*_cache/
# ---- Windows OS --------------------------------------------
# Cached small image files
Thumbs.db
# Folder config file
Desktop.ini
# ---- OS X --------------------------------------------------
.DS_Store
# ---- Visual Studio Code (text editor) ----------------------
.vscode/*
.vscode/settings.json
!.vscode/launch.json
# ---- Locks ----------------------
# Do not commit lock files.
# Programs like Microsoft Word create temporary files that don't contain info useful to the repo.
~*.tmp
~*.temp
# Temporary files of Microsoft Office.
~*.doc
~*.docx
~*.xlsx
~*.pptx
*.ldb
*.laccdb
# Temporary locks used by LibreOffice.
*.odb.lck
.~*.csv#
.~*.odf#
.~*.odp#
.~*.ods#
.~*.odt#
.~*.docx#
.~*.pptx#
.~*.xlsx#
# ---- reporting-files --------------------------------------
analysis/*/*.png
analysis/*/*.jpg
analysis/*/*.html
analysis/*/*/*.png
analysis/*/*/*.jpg
analysis/*/*/*.html
analysis/*/*/*/*.png
analysis/*/*/*/*.jpg
analysis/*/*/*/*.html
!analysis/analysis-templatization/README.html
# ---- Accidentally Added Code -------------------------------
# The GitHub desktop client makes it easy to right-click a file and select 'ignore'.
# This will append the file name to the bottom of `.gitignore`.
# So the lines below should either be
# 1. removed (because they were added unintentionally), or
# 2. reorganized and moved above this chunk (so it won't be confused with files added unintentionally).
!.vscode/tasks.json
!.vscode/launch.json
!.vscode/settings.json.example
case-note-simulator.code-workspace
analysis/M365-take-1/agent-instructions.md
analysis/M365-take-1/system-prompt.md
analysis/M365-take-1/user-prompt.md
analysis/eda-2-casenote/prints/case-note-dashboard_20251027_1011.pdf
analysis/eda-2-casenote/prints/case-note-dashboard_20251027_1016.pdf
analysis/eda-2-casenote/prints/case-note-dashboard_20251027_1021.pdf
analysis/eda-2-casenote/prints/case-note-dashboard_20251027_1023.pdf
analysis/eda-2-casenote/prints/case-note-dashboard_20251027_1026.pdf
.github/copilot-instructions.md
analysis/take-4-vscode/fabricatr.pdf
analysis/take-4-vscode/workflow/userPrompt_files/libs/bootstrap/bootstrap-icons.css
analysis/take-4-vscode/workflow/userPrompt_files/libs/bootstrap/bootstrap-icons.woff
analysis/take-4-vscode/workflow/userPrompt_files/libs/bootstrap/bootstrap.min.css
analysis/take-4-vscode/workflow/userPrompt_files/libs/bootstrap/bootstrap.min.js
analysis/take-4-vscode/workflow/userPrompt_files/libs/clipboard/clipboard.min.js
analysis/take-4-vscode/workflow/userPrompt_files/libs/quarto-html/anchor.min.js
analysis/take-4-vscode/workflow/userPrompt_files/libs/quarto-html/popper.min.js
analysis/take-4-vscode/workflow/userPrompt_files/libs/quarto-html/quarto-syntax-highlighting.css
analysis/take-4-vscode/workflow/userPrompt_files/libs/quarto-html/quarto.js
analysis/take-4-vscode/workflow/userPrompt_files/libs/quarto-html/tippy.css
analysis/take-4-vscode/workflow/userPrompt_files/libs/quarto-html/tippy.umd.min.js