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build: PyPI release as arda-mapper — publish.yml + testpypi.yml, bump 2.0.2
- distribution name -> arda-mapper (imports as `arda`); version 2.0.1 -> 2.0.2 - publish.yml: cibuildwheel (cp310-313, linux/macos/windows) + sdist, wheel smoke-import, OIDC trusted publishing (environment: pypi) on GitHub Release - testpypi.yml: same build, TestPyPI trusted publishing on workflow_dispatch / v* tags (dry-run) Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
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‎.github/workflows/publish.yml‎

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name: Publish To PyPI
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on:
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release:
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types:
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- published
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workflow_dispatch:
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permissions:
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contents: read
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jobs:
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build-sdist:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Install build tooling
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run: python -m pip install --upgrade pip build twine
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- name: Build source distribution
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run: python -m build --sdist
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- name: Check source distribution
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run: python -m twine check dist/*
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- name: Upload source distribution
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uses: actions/upload-artifact@v4
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with:
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name: python-sdist
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path: dist/
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build-wheels:
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name: Build wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-latest, windows-latest, macos-latest] # macos-latest = Apple Silicon arm64
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steps:
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- uses: actions/checkout@v4
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- name: Build wheels
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uses: pypa/cibuildwheel@v2.23.3
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env:
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# arda ships a pybind11/scikit-build-core C++ ext (src/_markup); scikit-build-core
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# pulls cmake + ninja into the build env automatically.
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CIBW_BUILD: "cp310-* cp311-* cp312-* cp313-*"
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CIBW_SKIP: "*-musllinux_* *-manylinux_i686 *-win32"
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CIBW_TEST_SKIP: "*"
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- name: Upload wheel artifacts
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uses: actions/upload-artifact@v4
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with:
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name: python-wheels-${{ matrix.os }}
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path: wheelhouse/*.whl
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test-wheels:
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name: Smoke-test wheel (${{ matrix.os }}, py${{ matrix.python-version }})
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needs: build-wheels
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-latest, windows-latest, macos-latest]
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python-version: ["3.10", "3.11", "3.12", "3.13"]
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include:
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- os: ubuntu-latest
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artifact: python-wheels-ubuntu-latest
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- os: windows-latest
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artifact: python-wheels-windows-latest
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- os: macos-latest
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artifact: python-wheels-macos-latest
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runs-on: ${{ matrix.os }}
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steps:
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- uses: actions/setup-python@v5
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with:
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python-version: ${{ matrix.python-version }}
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- name: Download wheel artifacts
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uses: actions/download-artifact@v4
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with:
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name: ${{ matrix.artifact }}
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path: wheels/
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- name: Install wheel and import arda
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shell: bash
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run: |
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pip install --upgrade pip
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tag="cp${{ matrix.python-version }}"; tag="${tag/./}"
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python - "$tag" <<'PY'
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import sys, glob, subprocess
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tag = sys.argv[1]
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matches = sorted(glob.glob(f"wheels/arda_mapper-*-{tag}-*.whl"))
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if len(matches) != 1:
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raise SystemExit(f"expected 1 wheel for {tag}, found {len(matches)}: {matches}")
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subprocess.check_call([sys.executable, "-m", "pip", "install", matches[0]])
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PY
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python -c "import arda; print('[OK] arda', arda.__version__)"
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publish:
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name: Publish To PyPI
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needs: [build-sdist, build-wheels, test-wheels]
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runs-on: ubuntu-latest
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environment: pypi
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permissions:
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contents: read
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id-token: write # required for OIDC trusted publishing
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steps:
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- uses: actions/checkout@v4
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- name: Download distributions
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uses: actions/download-artifact@v4
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with:
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pattern: python-*
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merge-multiple: true
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path: dist/
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- name: Validate package version matches release tag
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if: github.event_name == 'release'
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run: |
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python - <<'PY'
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from pathlib import Path
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import tomllib
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version = tomllib.loads(Path("pyproject.toml").read_text())["project"]["version"]
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tag = "${{ github.event.release.tag_name }}"
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norm = tag[1:] if tag.startswith("v") else tag
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if version != norm:
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raise SystemExit(f"Version mismatch: pyproject.toml={version}, tag={tag}")
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print(f"Version check passed: {version} == {tag}")
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PY
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- name: List distributions
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run: ls -R dist/
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- name: Publish distributions to PyPI
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uses: pypa/gh-action-pypi-publish@release/v1

‎.github/workflows/testpypi.yml‎

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name: Publish To TestPyPI
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on:
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workflow_dispatch:
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push:
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tags:
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- "v*"
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permissions:
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contents: read
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jobs:
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build-sdist:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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- uses: actions/setup-python@v5
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with:
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python-version: "3.12"
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- name: Install build tooling
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run: python -m pip install --upgrade pip build twine
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- name: Build source distribution
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run: python -m build --sdist
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- name: Check source distribution
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run: python -m twine check dist/*
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- name: Upload source distribution
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uses: actions/upload-artifact@v4
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with:
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name: python-sdist
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path: dist/
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build-wheels:
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name: Build wheels on ${{ matrix.os }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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os: [ubuntu-latest, windows-latest, macos-latest]
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steps:
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- uses: actions/checkout@v4
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- name: Build wheels
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uses: pypa/cibuildwheel@v2.23.3
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env:
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CIBW_BUILD: "cp310-* cp311-* cp312-* cp313-*"
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CIBW_SKIP: "*-musllinux_* *-manylinux_i686 *-win32"
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CIBW_TEST_COMMAND: 'python -c "import arda; print(''arda OK'')"'
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- name: Upload wheel artifacts
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uses: actions/upload-artifact@v4
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with:
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name: python-wheels-${{ matrix.os }}
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path: wheelhouse/*.whl
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publish-testpypi:
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name: Publish To TestPyPI
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needs: [build-sdist, build-wheels]
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runs-on: ubuntu-latest
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permissions:
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contents: read
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id-token: write
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steps:
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- name: Download distributions
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uses: actions/download-artifact@v4
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with:
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pattern: python-*
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merge-multiple: true
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path: dist/
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- name: List distributions
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run: ls -R dist/
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- name: Publish distributions to TestPyPI
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uses: pypa/gh-action-pypi-publish@release/v1
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with:
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repository-url: https://test.pypi.org/legacy/

‎pyproject.toml‎

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build-backend = "scikit_build_core.build"
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[project]
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name = "arda"
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version = "2.0.1"
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name = "arda-mapper" # PyPI distribution name (`arda` is taken); imports as `arda`
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version = "2.0.2"
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description = "Antigen Receptor Domain Annotation — fast TCR/BCR FR/CDR region annotation"
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readme = "README.md"
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requires-python = ">=3.10"

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