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bench: clustering producers for clusTCR, GIANA, iSMART, DeepTCR #30

bench: clustering producers for clusTCR, GIANA, iSMART, DeepTCR

bench: clustering producers for clusTCR, GIANA, iSMART, DeepTCR #30

Workflow file for this run

name: docs
on:
push:
branches: [dev, master]
workflow_dispatch:
permissions:
contents: read
pages: write
id-token: write
# Per-ref so a dev push never cancels an in-flight master Pages deploy.
concurrency:
group: pages-${{ github.ref }}
cancel-in-progress: true
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.12"
- name: Install docs toolchain
# autodoc imports vdjmatch with heavy deps (seqtree, polars) mocked in docs/conf.py,
# so the native seqtree toolchain is not needed to build docs.
run: pip install sphinx pydata-sphinx-theme nbsphinx ipython
- name: Build HTML (fail on warnings)
run: sphinx-build -W --keep-going -b html docs docs/_build/html
- uses: actions/upload-pages-artifact@v3
with:
path: docs/_build/html
deploy:
needs: build
# The github-pages environment only allows deploys from the default branch; on dev we
# validate the build (above) but skip deployment so the workflow stays green.
if: github.ref == 'refs/heads/master'
runs-on: ubuntu-latest
environment:
name: github-pages
url: ${{ steps.deployment.outputs.page_url }}
steps:
- id: deployment
uses: actions/deploy-pages@v4