Empty file test

Author: mikessh

.travis.yml

@@ -18,4 +18,10 @@ script:
   - if [[ ! -s test.sergey_anatolyevich.annot.txt ]]; then echo "No results file"; exit 1; fi
   - if [[ ! -s test.annot.summary.txt ]]; then echo "No summary file"; exit 1; fi; cat test.annot.summary.txt | head
   - java -Xmx4G -jar vdjtools/target/vdjtools-*.jar Annotate test.sergey_anatolyevich.annot.txt annot/
-  - if [[ ! -s annot/metadata.txt ]]; then echo "No metadata file"; exit 1; fi
+  - if [[ ! -s annot/metadata.txt ]]; then echo "No metadata file"; exit 1; fi
+  - java -Xmx4G -jar `ls build/libs/vdjdb-*.jar` -S human -R TRB src/test/resources/empty.txt test_empty
+  - if [[ ! -s test_empty.empty.annot.txt ]]; then echo "No results file"; exit 1; fi;
+  - if [[ ! -s test_empty.annot.summary.txt ]]; then echo "No summary file"; exit 1; fi; cat test_empty.annot.summary.txt | head
+  - java -Xmx4G -jar `ls build/libs/vdjdb-*.jar` -S human -R TRB src/test/resources/no_found.txt test_empty2
+  - if [[ ! -s test_empty2.no_found.annot.txt ]]; then echo "No results file"; exit 1; fi;
+  - if [[ ! -s test_empty2.annot.summary.txt ]]; then echo "No summary file"; exit 1; fi; cat test_empty2.annot.summary.txt | head

src/test/resources/empty.txt

@@ -0,0 +1 @@
+#count	freq	cdr3nt	cdr3aa	v	d	j

src/test/resources/no_found.txt

@@ -0,0 +1,16 @@
+#count	freq	cdr3nt	cdr3aa	v	d	j
+1	7.378440197742197E-5	TGTGCTAGCAGTCCGGGACTTAGCTCCTACAATGAGCAGTTCTTC	CASSPGLSSYNEQFF	TRBV7-7	.	TRBJ2-1
+1	7.378440197742197E-5	TGTGCTAGCAGTTTTAGAGGGGGCACTGAAGCTTTCTTC	CASSFRGGTEAFF	TRBV27	.	TRBJ2-5
+1	7.378440197742197E-5	TGTGCTAGTAGCTTGGCTCTCGGTCGGACAGATACGCAGTATTTT	CASSLALGRTDTQYF	TRBV7-7	.	TRBJ2-3
+1	7.378440197742197E-5	TGTGCTAGTACCCGGAGGGGGCGAGATACGCAGTATTTT	CASTRRGRDTQYF	TRBV12-5	.	TRBJ2-3
+1	7.378440197742197E-5	TGTGCTAGTGGCCCCCGAGCGGGAGGCTCCTACGAGCAGTACTTC	CASGPRAGGSYEQYF	TRBV12-5	.	TRBJ2-7
+1	7.378440197742197E-5	TGTGCTAGTGGTTCCCCGGACCAGCCCCAGCATTTT	CASGSPDQPQHF	TRBV12-5	.	TRBJ1-5
+1	7.378440197742197E-5	TGTGCTAGTGGTTTGGACGGACTAGCGGGAGTATATGAGCAGTTCTTC	CASGLDGLAGVYEQFF	TRBV12-5	.	TRBJ2-1
+1	7.378440197742197E-5	TGTGCTAGTGGTTTGGACTCTGGAGCGGGAACCTACAATGAGCAGTTCTTC	CASGLDSGAGTYNEQFF	TRBV12-5	.	TRBJ2-1
+1	7.378440197742197E-5	TGTGCTAGTGCTAGAAGGCTAGCGGGAGGGGAAGAGCAGTACTTC	CASARRLAGGEEQYF	TRBV12-5	.	TRBJ2-7
+1	7.378440197742197E-5	TGTGCTGCCGGGACTAGCGACAACAATGAGCAGTTCTTC	CAAGTSDNNEQFF	TRBV7-9	.	TRBJ2-1
+1	7.378440197742197E-5	TGTGCTCTGACTGGGTCAAACACAGATACGCAGTATTTT	CALTGSNTDTQYF	TRBV28	.	TRBJ2-3
+1	7.378440197742197E-5	TGTGTCAGCAGGACCGGCGGGACGGCCTATGGCTACACCTTT	CVSRTGGTAYGYTF	TRBV28	.	TRBJ1-6
+1	7.378440197742197E-5	TGTGTCAGCAGGGACAGACCCTACTATGGCTACACCTTC	CVSRDRPYYGYTF	TRBV28	.	TRBJ1-2
+1	7.378440197742197E-5	TGTGTCAGCAGCTTAAGTAACACCGGGGAGCTGTTTTTT	CVSSLSNTGELFF	TRBV7-9	.	TRBJ2-2
+1	7.378440197742197E-5	TGTGTCAGCAGCTTAGAGGCGCCTGTCGGGGAGCTGTTTTTT	CVSSLEAPVGELFF	TRBV11-1	.	TRBJ2-2