Update package documentation

Author: Liam Hobby

DESCRIPTION

@@ -27,6 +27,7 @@ Depends:
 Imports: 
     cli,
     dplyr,
+    lifecycle,
     magrittr,
     purrr,
     R6,

NAMESPACE

@@ -69,6 +69,8 @@ importFrom(dplyr,rowwise)
 importFrom(dplyr,select)
 importFrom(dplyr,summarise)
 importFrom(dplyr,ungroup)
+importFrom(lifecycle,deprecate_soft)
+importFrom(lifecycle,deprecated)
 importFrom(magrittr,"%>%")
 importFrom(purrr,compact)
 importFrom(purrr,discard)

R/utils.R

@@ -180,7 +180,7 @@ metacore_example <- function(file = NULL) {
 #'   warning("This warning is also suppressed")
 #'   4 + 4
 #' }, quiet = TRUE)
-#' @export
+#' @noRd
 with_verbosity <- function(expr, quiet = FALSE, verbose = "message") {
    expr <- substitute(expr)
    verbose <- validate_verbose(verbose)

man/define_to_metacore.Rd

@@ -232,7 +232,7 @@ Now we have all the tables we need we can make the metacore object
 
 ```{r}
 metacore(ds_spec, ds_vars, var_spec, value_spec,
-         derivation, codelist)
+         derivation, codelist, verbose = "message")
 ```
 
 And we're good to go!