Use pyproject.toml instead of deprecated setup.

Author: fescudie

pyproject.toml

@@ -0,0 +1,28 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+authors = [
+    {name = "Frederic Escudie", email = "escudie.frederic@iuct-oncopole.fr"}
+]
+description = "Scripts for easily process NGS data from medical centers. This package contains several aggregators, converters, filters, wrappers, etc."
+dependencies = [
+    "scipy == 1.11.3",
+    "pysam == 0.23.3",
+    "anacore == 2.12.1",
+    "scikit-learn == 1.3.2"
+]
+dynamic = ["version"]
+keywords = ["bio", "NGS"]
+license.text = "GNU GPL v3"
+name = "anacore-utils"
+readme = "README.md"
+requires-python = ">=3.10"
+
+[project.urls]
+Homepage = "https://github.com/bialimed/anacore-utils"
+Repository = "https://github.com/bialimed/anacore-utils"
+
+[tool.setuptools.packages.find]
+where = ['bin']

requirements.txt

@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 import os
 import re
-from distutils.core import setup
+from setuptools import setup
 
 
 def get_version():
@@ -14,36 +14,6 @@ def get_version():
     return version
 
 
-def load_scripts(path):
-    scripts = []
-    for filename in os.listdir(path):
-        filepath = os.path.join(path, filename)
-        if os.path.isdir(filepath):
-            if filename != "test":
-                load_scripts(filepath)
-        else:
-            if filename.endswith(".py") and not filename.startswith("__"):
-                scripts.append(filepath)
-    return scripts
-
-
-def load_requirements(path):
-    requirements = []
-    with open(path) as FH:
-        requirements = [elt.strip().replace(" ", "") for elt in FH]
-    return requirements
-
-
 setup(
-    name='anacore-utils',
     version=get_version(),
-    description='Scripts for easily process NGS data.',
-    long_description='Scripts for easily process NGS data from medical centers. This package contains several aggregators, converters, filters, wrappers, etc.',
-    author='Frederic Escudie',
-    author_email='escudie.frederic@iuct-oncopole.fr',
-    license='GNU GPL v3',
-    packages=["bin"],
-    python_requires='>=3.10',
-    install_requires=load_requirements("requirements.txt"),
-    scripts=load_scripts("bin")
 )