default padding max size to 100kb

vinzenzmay · vinzenzmay · commit 554bce2ee56f · 2026-06-08T15:44:13.000+02:00
diff --git a/src/svirlpool/__main__.py b/src/svirlpool/__main__.py
@@ -219,7 +219,7 @@ def get_parser():
         help="Maximum number of bases to use for padding flanks (default: 100000).",
         required=False,
         type=int,
-        default=10000,
+        default=100000,
     )
     parser_run_wf.add_argument(
         "--rerun-triggers",
diff --git a/src/svirlpool/localassembly/consensus.py b/src/svirlpool/localassembly/consensus.py
@@ -3658,7 +3658,7 @@ def get_consensus_parser(
         "--min-padding-size",
         type=int,
         required=False,
-        default=10000,
+        default=100000,
         help="Minimum number of bases to use for padding flanks (default: 10000).",
     )
     return parser

Original file line number	Diff line number	Diff line change
`@@ -219,7 +219,7 @@ def get_parser():`
`219`	`219`	`help="Maximum number of bases to use for padding flanks (default: 100000).",`
`220`	`220`	`required=False,`
`221`	`221`	`type=int,`
`222`		`- default=10000,`
	`222`	`+ default=100000,`
`223`	`223`	`)`
`224`	`224`	`parser_run_wf.add_argument(`
`225`	`225`	`"--rerun-triggers",`
Original file line number	Diff line number	Diff line change
`@@ -3658,7 +3658,7 @@ def get_consensus_parser(`
`3658`	`3658`	`"--min-padding-size",`
`3659`	`3659`	`type=int,`
`3660`	`3660`	`required=False,`
`3661`		`- default=10000,`
	`3661`	`+ default=100000,`
`3662`	`3662`	`help="Minimum number of bases to use for padding flanks (default: 10000).",`
`3663`	`3663`	`)`
`3664`	`3664`	`return parser`