- vcfpy version: vcfpy 0.13.6
- Python version: 3.8.5
- Operating System: Linux
Description
I want to add self defined Filter into my vcf column (such as LowQual etc)
What I Did
## read a vcf
vcf_reader= vcfpy.Reader.from_path(vcfInput)
## add Filter-Header
## vcf output
vcf_writer= vcfpy.Writer.from_path(newOutput+'/'+ name+'.filtered.vcf',vcf_reader.header)
## add filter in each variant e.g if QUAL < 30: filter= "LowQual"
## write variant in vcf output
vcf_writer.write_record(record)
Solution:
maybe instead of:
",".join(...)
use
','.join(...)
Description
I want to add self defined Filter into my vcf column (such as LowQual etc)
What I Did
Solution:
maybe instead of:
",".join(...)use
','.join(...)