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Expand file tree Collapse file tree Original file line number Diff line number Diff line change 1+ # Change Log
2+ All notable changes to this project will be documented in this file.
3+ This project adheres to [ Semantic Versioning] ( http://semver.org/ ) .
4+
5+ ## [ 0.2] 2019-05-21
6+
7+ ### Added
8+ - New ` getrefr ` module for installing human reference genome (see #30 ).
9+ - Improved error handling related to BAM index files (see #31 ).
10+
11+ ### Changed
12+ - Replaced pip/PyPI installation instructions with bioconda installation instructions (see 1b61c59200).
13+
14+ ### Fixed
15+ - Corrected usage statement for ` mhpl8r contrib ` (see #31 ).
16+
17+
18+ ## [ 0.1.3] 2019-05-14
19+
20+ - mark failing test
21+ - exclude ` __init__.py ` from test invocation
22+
23+
24+ ## [ 0.1.2] 2019-05-07
25+
26+ Updating file manifest, troubleshooting bioconda build.
27+
28+
29+ ## [ 0.1.1] 2019-05-07
30+
31+ Minor fix to ` setup.py ` for distribution purposes.
32+
33+
34+ ## [ 0.1] 2019-05-02
35+
36+ Initial release of MicroHapulator!
37+
38+ Command-line entry point: ` mhpl8r `
39+ Command-line operations:
40+ - ` contrib ` : estimate number of contributors in a sample
41+ - ` dist ` : compute naive Hamming distance between two sample genotypes
42+ - ` mixture ` : simulate a multiple-contributor sample
43+ - ` refr ` : retrieve reference genome cutouts for a specified microhap panel
44+ - ` sim ` : simulate a single-contributor sample
45+ - ` type ` : infer genotype from mapped reads
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