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Troubleshoot CI (#55)
* Troubleshoot CI * cron updates
1 parent c001db7 commit e05644d

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.github/workflows/cibuild.yml

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@@ -37,7 +37,6 @@ jobs:
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popd
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- name: Install
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run: |
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python -m pip install --upgrade pip
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pip install .
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- name: Style check
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run: |

pytaxonkit.py

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@@ -206,7 +206,7 @@ def list(ids, raw=False, threads=None, data_dir=None, debug=False):
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... print(f'Top level result: {taxon.name} ({taxon.taxid}); {len(subtaxa)} related taxa')
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...
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Top level result: Polistes comanchus (268197); 2 related taxa
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Top level result: Bos (9903); 33 related taxa
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Top level result: Bos (9903); 34 related taxa
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>>> subtaxa[0]
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BasicTaxon(taxid=9904, rank='species', name='Bos gaurus')
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>>> pytaxonkit.list([9605], raw=True)
@@ -1222,10 +1222,10 @@ def test_lca_keep_invalid_multi():
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@pytest.mark.parametrize(
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"domulti, ids,result",
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"domulti, ids, result",
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[
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(False, [775536, 2238728, 1121123211234321], None),
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(True, [[1766280, 406491, 2568889], [11111111111, 20487, 760325]], [None, None]),
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(False, [775536, 2238728, 3602992145], None),
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(True, [[3198828, 406491, 2222222222], [1111111111, 20487, 3674241]], [None, None]),
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],
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)
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def test_lca_all_missing(ids, domulti, result):

sweetleaf.json

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"1340892 [species] Symplocos xylopyrena": {},
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"1382184 [species] Symplocos ampulliformis": {},
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"1489813 [species] Symplocos acuminata": {},
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"1538024 [species] Symplocos munda": {},
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"1603839 [species] Symplocos crassifolia": {},
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"1603840 [species] Symplocos urceolaris": {},
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"1609893 [species] Symplocos adinandrifolia": {
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"1619550 [species] Symplocos harroldii": {},
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"1619551 [species] Symplocos stawellii": {},
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"1679332 [species] Symplocos yunnanensis": {},
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"1789566 [species] Symplocos obtusa": {},
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"1827319 [species] Symplocos crassipes": {},
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"1842783 [species] Symplocos thwaitesii": {},
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"2072302 [species] Symplocos estrellensis": {},

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